Strain Fitness in Pseudomonas simiae WCS417 around PS417_25100

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
5,441,436	+		PS417_25090	0.60	+1.5
5,441,436	+		PS417_25090	0.60	-0.8
5,441,437	-		PS417_25090	0.60	-0.3
5,441,437	-		PS417_25090	0.60	-0.8
5,441,437	-		PS417_25090	0.60	+0.8
5,441,437	-		PS417_25090	0.60	-1.1
5,441,460	+		PS417_25090	0.62	-0.3
5,441,460	+				+1.5
5,441,461	-		PS417_25090	0.62	-0.3
5,441,461	-		PS417_25090	0.62	+0.2
5,441,553	+		PS417_25090	0.69	+0.5
5,441,553	+		PS417_25090	0.69	-0.6
5,441,597	+		PS417_25090	0.73	-0.1
5,441,598	-		PS417_25090	0.73	-0.5
5,441,598	-		PS417_25090	0.73	+0.0
5,441,601	-		PS417_25090	0.73	-0.4
5,441,614	+		PS417_25090	0.74	+0.8
5,441,614	+				-0.5
5,441,614	+		PS417_25090	0.74	+1.1
5,441,614	+		PS417_25090	0.74	-0.3
5,441,614	+		PS417_25090	0.74	-0.8
5,441,614	+		PS417_25090	0.74	-0.4
5,441,615	-		PS417_25090	0.74	+0.7
5,441,615	-				-0.1
5,441,615	-		PS417_25090	0.74	+0.5
5,441,671	-		PS417_25090	0.79	-0.2
5,441,742	+		PS417_25090	0.84	+0.9
5,441,742	+		PS417_25090	0.84	+0.0
5,441,742	+		PS417_25090	0.84	-0.1
5,441,743	-		PS417_25090	0.84	+1.5
5,441,835	-				-1.0
5,441,966	+				+0.2
5,441,967	-				+0.5
5,442,167	+		PS417_25095	0.54	-0.8
5,442,167	+		PS417_25095	0.54	+0.2
5,442,167	+		PS417_25095	0.54	-0.2
5,442,167	+		PS417_25095	0.54	+0.3
5,442,168	-		PS417_25095	0.54	-0.7
5,442,168	-		PS417_25095	0.54	-0.2
5,442,269	+		PS417_25095	0.78	+0.0
5,442,347	-				-0.9
5,442,347	-				-1.4
5,442,347	-				+3.3
5,442,400	-				+0.5
5,442,400	-				-2.5
5,442,444	+				+1.5
5,442,444	+				-0.5
5,442,445	-				-1.7
5,442,510	+				+0.1
5,442,511	-				-0.7
5,442,511	-				+0.8
5,442,511	-				-0.9
5,442,518	+				-0.4
5,442,518	+				-0.6
5,442,518	+				-1.1
5,442,718	+		PS417_25100	0.20	-1.1
5,442,718	+		PS417_25100	0.20	-0.2
5,442,718	+		PS417_25100	0.20	-0.5
5,442,719	-		PS417_25100	0.20	-1.5
5,442,719	-		PS417_25100	0.20	-1.1
5,442,727	+		PS417_25100	0.21	-1.4
5,442,727	+		PS417_25100	0.21	+0.4
5,442,727	+		PS417_25100	0.21	-1.8
5,442,727	+		PS417_25100	0.21	+0.4
5,442,902	-		PS417_25100	0.33	-0.7
5,443,055	-		PS417_25100	0.44	-0.8
5,443,160	+		PS417_25100	0.52	-0.4
5,443,161	-		PS417_25100	0.52	-2.0
5,443,161	-		PS417_25100	0.52	-0.7
5,443,161	-		PS417_25100	0.52	-0.8
5,443,172	-		PS417_25100	0.53	-1.5
5,443,205	+		PS417_25100	0.55	-0.3
5,443,205	+		PS417_25100	0.55	+0.6
5,443,206	-		PS417_25100	0.55	-0.8
5,443,206	-		PS417_25100	0.55	-0.5
5,443,206	-		PS417_25100	0.55	-2.4
5,443,230	+		PS417_25100	0.57	-0.2
5,443,231	-		PS417_25100	0.57	+0.3
5,443,254	+		PS417_25100	0.59	-0.1
5,443,293	+		PS417_25100	0.62	-0.4
5,443,293	+		PS417_25100	0.62	-0.0
5,443,294	-		PS417_25100	0.62	-0.8
5,443,400	+		PS417_25100	0.69	+0.0
5,443,450	+		PS417_25100	0.73	-0.1
5,443,450	+		PS417_25100	0.73	-0.3
5,443,451	-		PS417_25100	0.73	-1.4
5,443,451	-		PS417_25100	0.73	+0.2
5,443,451	-		PS417_25100	0.73	-0.5
5,443,451	-		PS417_25100	0.73	+0.0
5,443,454	+		PS417_25100	0.73	-0.2
5,443,454	+		PS417_25100	0.73	-0.2
5,443,454	+		PS417_25100	0.73	-0.3
5,443,454	+		PS417_25100	0.73	-0.1
5,443,454	+		PS417_25100	0.73	-0.8
5,443,454	+		PS417_25100	0.73	+0.2
5,443,454	+		PS417_25100	0.73	-0.8
5,443,454	+		PS417_25100	0.73	-0.7
5,443,455	-		PS417_25100	0.73	-1.1
5,443,455	-		PS417_25100	0.73	-0.4
5,443,455	-		PS417_25100	0.73	-1.0
5,443,455	-		PS417_25100	0.73	-0.3
5,443,455	-		PS417_25100	0.73	-1.0
5,443,455	-		PS417_25100	0.73	-1.8
5,443,455	-		PS417_25100	0.73	-0.6
5,443,455	-		PS417_25100	0.73	-1.3
5,443,455	-		PS417_25100	0.73	-0.7
5,443,455	-		PS417_25100	0.73	-0.1
5,443,456	+		PS417_25100	0.73	-1.1
5,443,456	+		PS417_25100	0.73	+0.5
5,443,456	+		PS417_25100	0.73	-0.7
5,443,456	+		PS417_25100	0.73	+0.2
5,443,457	-		PS417_25100	0.73	-0.1
5,443,457	-		PS417_25100	0.73	-0.6
5,443,457	-		PS417_25100	0.73	-1.6
5,443,501	+		PS417_25100	0.77	-0.3
5,443,501	+		PS417_25100	0.77	+0.1
5,443,501	+		PS417_25100	0.77	-0.4
5,443,501	+		PS417_25100	0.77	+0.5
5,443,501	+		PS417_25100	0.77	+0.9
5,443,502	-		PS417_25100	0.77	-0.5
5,443,502	-		PS417_25100	0.77	-0.5
5,443,518	-		PS417_25100	0.78	-1.0
5,443,580	+		PS417_25100	0.82	+2.1
5,443,581	-		PS417_25100	0.82	-1.9
5,443,581	-		PS417_25100	0.82	-1.6
5,443,591	+		PS417_25100	0.83	-1.1
5,443,625	+		PS417_25100	0.85	+0.5
5,443,625	+		PS417_25100	0.85	-1.9
5,443,643	+		PS417_25100	0.87	-0.7
5,443,644	-		PS417_25100	0.87	-0.5
5,443,715	+				+0.5
5,443,722	+				+1.5
5,443,722	+				-0.5
5,443,723	-				+0.3
5,443,828	+				-0.5
5,443,828	+				+0.0
5,443,927	-		PS417_25105	0.13	+0.3
5,443,927	-		PS417_25105	0.13	-0.3
5,443,930	+		PS417_25105	0.14	+0.1
5,443,930	+		PS417_25105	0.14	+1.4
5,444,017	+		PS417_25105	0.26	-0.0
5,444,017	+		PS417_25105	0.26	-0.3
5,444,017	+		PS417_25105	0.26	-0.3
5,444,017	+		PS417_25105	0.26	+0.1
5,444,018	-		PS417_25105	0.26	-1.1
5,444,018	-				+1.5
5,444,018	-		PS417_25105	0.26	-1.3
5,444,084	+		PS417_25105	0.35	-0.1
5,444,084	+		PS417_25105	0.35	+1.0
5,444,085	-		PS417_25105	0.35	-1.1
5,444,085	-		PS417_25105	0.35	-1.4
5,444,085	-		PS417_25105	0.35	-1.7
5,444,340	+		PS417_25105	0.69	-0.3
5,444,350	-		PS417_25105	0.71	-1.7
5,444,483	+		PS417_25105	0.89	+0.5
5,444,483	+		PS417_25105	0.89	-0.2
5,444,483	+		PS417_25105	0.89	-0.0