Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19330 and PS417_19335 are separated by 239 nucleotides PS417_19335 and PS417_19340 are separated by 142 nucleotides PS417_19340 and PS417_19345 are separated by 75 nucleotides
PS417_19330: PS417_19330 - SAM-dependent methyltransferase, at 4,192,061 to 4,192,972
_19330
PS417_19335: PS417_19335 - isochorismatase, at 4,193,212 to 4,193,802
_19335
PS417_19340: PS417_19340 - hypothetical protein, at 4,193,945 to 4,194,265
_19340
PS417_19345: PS417_19345 - DNA mismatch repair protein MutS, at 4,194,341 to 4,194,898
_19345
Position (kb) 4193
4194 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4192.717 kb on - strand, within PS417_19330 at 4193.008 kb on + strand at 4193.036 kb on - strand at 4193.036 kb on - strand at 4193.036 kb on - strand at 4193.036 kb on - strand at 4193.132 kb on + strand at 4193.132 kb on + strand at 4193.132 kb on + strand at 4193.133 kb on - strand at 4193.312 kb on - strand, within PS417_19335 at 4193.423 kb on + strand, within PS417_19335 at 4193.423 kb on + strand, within PS417_19335 at 4193.877 kb on - strand at 4193.903 kb on - strand at 4193.903 kb on - strand at 4194.045 kb on + strand, within PS417_19340 at 4194.181 kb on - strand, within PS417_19340 at 4194.312 kb on + strand at 4194.313 kb on - strand at 4194.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 4,192,717 - PS417_19330 0.72 +0.8 4,193,008 + +0.1 4,193,036 - +0.6 4,193,036 - +0.9 4,193,036 - +0.4 4,193,036 - +0.7 4,193,132 + -0.5 4,193,132 + -0.1 4,193,132 + +2.7 4,193,133 - +0.3 4,193,312 - PS417_19335 0.17 +1.1 4,193,423 + PS417_19335 0.36 +0.2 4,193,423 + PS417_19335 0.36 +1.1 4,193,877 - +1.1 4,193,903 - +2.3 4,193,903 - -1.4 4,194,045 + PS417_19340 0.31 -0.4 4,194,181 - PS417_19340 0.74 -2.1 4,194,312 + -0.1 4,194,313 - +0.2 4,194,313 - -0.8
Or see this region's nucleotide sequence