Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01885 and PS417_01890 are separated by 78 nucleotides PS417_01890 and PS417_01895 are separated by 27 nucleotides PS417_01895 and PS417_01900 are separated by 88 nucleotides
PS417_01885: PS417_01885 - poly(3-hydroxyalkanoate) granule-associated protein PhaF, at 416,743 to 417,726
_01885
PS417_01890: PS417_01890 - TetR family transcriptional regulator, at 417,805 to 418,425
_01890
PS417_01895: PS417_01895 - poly(R)-hydroxyalkanoic acid synthase, at 418,453 to 420,135
_01895
PS417_01900: PS417_01900 - poly(3-hydroxyalkanoate) depolymerase, at 420,224 to 421,069
_01900
Position (kb) 418
419
420
421 Strain fitness (log2 ratio) -1
0
1
2
3 at 417.621 kb on + strand, within PS417_01885 at 417.622 kb on - strand, within PS417_01885 at 417.806 kb on + strand at 417.807 kb on - strand at 417.824 kb on + strand at 417.825 kb on - strand at 417.868 kb on + strand, within PS417_01890 at 417.868 kb on + strand, within PS417_01890 at 417.868 kb on + strand, within PS417_01890 at 417.899 kb on + strand, within PS417_01890 at 417.900 kb on - strand, within PS417_01890 at 417.914 kb on - strand, within PS417_01890 at 418.152 kb on - strand, within PS417_01890 at 418.193 kb on + strand, within PS417_01890 at 418.194 kb on - strand, within PS417_01890 at 418.194 kb on - strand, within PS417_01890 at 418.277 kb on - strand, within PS417_01890 at 418.304 kb on + strand, within PS417_01890 at 418.304 kb on + strand, within PS417_01890 at 418.307 kb on + strand, within PS417_01890 at 418.436 kb on + strand at 418.436 kb on + strand at 418.437 kb on - strand at 418.437 kb on - strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.470 kb on - strand at 418.470 kb on - strand at 418.470 kb on - strand at 418.610 kb on + strand at 418.611 kb on - strand at 418.652 kb on + strand, within PS417_01895 at 418.652 kb on + strand, within PS417_01895 at 418.652 kb on + strand, within PS417_01895 at 418.754 kb on + strand, within PS417_01895 at 418.985 kb on + strand, within PS417_01895 at 418.985 kb on + strand, within PS417_01895 at 418.985 kb on + strand, within PS417_01895 at 418.985 kb on + strand, within PS417_01895 at 418.985 kb on + strand, within PS417_01895 at 418.986 kb on - strand, within PS417_01895 at 418.986 kb on - strand, within PS417_01895 at 418.986 kb on - strand, within PS417_01895 at 418.986 kb on - strand, within PS417_01895 at 419.162 kb on - strand, within PS417_01895 at 419.327 kb on + strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.356 kb on + strand at 419.356 kb on + strand, within PS417_01895 at 419.448 kb on + strand, within PS417_01895 at 419.448 kb on + strand, within PS417_01895 at 419.448 kb on + strand, within PS417_01895 at 419.450 kb on + strand, within PS417_01895 at 419.451 kb on - strand, within PS417_01895 at 419.451 kb on - strand, within PS417_01895 at 419.453 kb on + strand, within PS417_01895 at 419.454 kb on - strand, within PS417_01895 at 419.454 kb on - strand, within PS417_01895 at 419.454 kb on - strand, within PS417_01895 at 419.495 kb on + strand, within PS417_01895 at 419.519 kb on + strand, within PS417_01895 at 419.519 kb on + strand, within PS417_01895 at 419.520 kb on - strand, within PS417_01895 at 419.846 kb on + strand, within PS417_01895 at 419.846 kb on + strand, within PS417_01895 at 419.847 kb on - strand, within PS417_01895 at 420.188 kb on + strand at 420.225 kb on + strand at 420.259 kb on + strand at 420.260 kb on - strand at 420.499 kb on - strand, within PS417_01900 at 420.622 kb on - strand, within PS417_01900 at 420.673 kb on + strand, within PS417_01900 at 420.793 kb on - strand, within PS417_01900 at 420.802 kb on - strand, within PS417_01900 at 421.046 kb on - strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 417,621 + PS417_01885 0.89 -0.8 417,622 - PS417_01885 0.89 +1.0 417,806 + +0.0 417,807 - -0.2 417,824 + -0.1 417,825 - +0.6 417,868 + PS417_01890 0.10 -1.7 417,868 + PS417_01890 0.10 -0.4 417,868 + PS417_01890 0.10 +0.8 417,899 + PS417_01890 0.15 -0.7 417,900 - PS417_01890 0.15 -1.7 417,914 - PS417_01890 0.18 -1.5 418,152 - PS417_01890 0.56 -0.9 418,193 + PS417_01890 0.62 +1.6 418,194 - PS417_01890 0.63 +0.0 418,194 - PS417_01890 0.63 -0.3 418,277 - PS417_01890 0.76 +0.2 418,304 + PS417_01890 0.80 +0.1 418,304 + PS417_01890 0.80 +1.2 418,307 + PS417_01890 0.81 +1.0 418,436 + -1.4 418,436 + +1.2 418,437 - -1.0 418,437 - -0.8 418,469 + -0.3 418,469 + -1.0 418,469 + +0.8 418,469 + -0.6 418,469 + -0.7 418,469 + +0.9 418,469 + +0.5 418,469 + +2.9 418,469 + -1.0 418,470 - -0.4 418,470 - +0.2 418,470 - +0.7 418,610 + -0.4 418,611 - -0.4 418,652 + PS417_01895 0.12 +0.7 418,652 + PS417_01895 0.12 -0.6 418,652 + PS417_01895 0.12 +1.0 418,754 + PS417_01895 0.18 -1.2 418,985 + PS417_01895 0.32 -0.9 418,985 + PS417_01895 0.32 +0.4 418,985 + PS417_01895 0.32 -0.1 418,985 + PS417_01895 0.32 +1.3 418,985 + PS417_01895 0.32 -1.0 418,986 - PS417_01895 0.32 +1.6 418,986 - PS417_01895 0.32 -0.4 418,986 - PS417_01895 0.32 -0.7 418,986 - PS417_01895 0.32 +1.2 419,162 - PS417_01895 0.42 -0.8 419,327 + PS417_01895 0.52 +0.1 419,328 - PS417_01895 0.52 +0.2 419,328 - PS417_01895 0.52 +1.3 419,328 - PS417_01895 0.52 +1.6 419,328 - PS417_01895 0.52 +0.0 419,356 + +0.0 419,356 + PS417_01895 0.54 +0.0 419,448 + PS417_01895 0.59 +0.9 419,448 + PS417_01895 0.59 +0.0 419,448 + PS417_01895 0.59 -0.6 419,450 + PS417_01895 0.59 -0.1 419,451 - PS417_01895 0.59 -0.2 419,451 - PS417_01895 0.59 +1.7 419,453 + PS417_01895 0.59 -0.8 419,454 - PS417_01895 0.59 -0.1 419,454 - PS417_01895 0.59 +0.9 419,454 - PS417_01895 0.59 -1.2 419,495 + PS417_01895 0.62 +1.9 419,519 + PS417_01895 0.63 -0.2 419,519 + PS417_01895 0.63 +1.0 419,520 - PS417_01895 0.63 -0.2 419,846 + PS417_01895 0.83 +0.2 419,846 + PS417_01895 0.83 +1.8 419,847 - PS417_01895 0.83 -0.4 420,188 + -0.8 420,225 + -0.5 420,259 + +0.9 420,260 - -0.4 420,499 - PS417_01900 0.33 -0.6 420,622 - PS417_01900 0.47 -1.6 420,673 + PS417_01900 0.53 +0.9 420,793 - PS417_01900 0.67 -0.8 420,802 - PS417_01900 0.68 +0.9 421,046 - -0.5 421,094 + -0.4 421,094 + -1.4 421,094 + +1.3 421,094 + -0.1 421,095 - +3.0 421,095 - -0.8 421,095 - +0.1 421,095 - +1.6 421,095 - -1.2 421,095 - -1.3 421,095 - +0.0
Or see this region's nucleotide sequence