Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01425 and PS417_01430 are separated by 533 nucleotides PS417_01430 and PS417_01435 overlap by 4 nucleotides PS417_01435 and PS417_01440 overlap by 11 nucleotides
PS417_01425: PS417_01425 - AraC family transcriptional regulator, at 315,999 to 316,868
_01425
PS417_01430: PS417_01430 - chromosome segregation protein SMC, at 317,402 to 319,762
_01430
PS417_01435: PS417_01435 - hypothetical protein, at 319,759 to 320,478
_01435
PS417_01440: PS417_01440 - hypothetical protein, at 320,468 to 321,907
_01440
Position (kb) 317
318
319
320 Strain fitness (log2 ratio) -2
-1
0
1
2 at 316.595 kb on - strand, within PS417_01425 at 316.851 kb on + strand at 316.852 kb on - strand at 316.852 kb on - strand at 316.852 kb on - strand at 316.998 kb on + strand at 316.998 kb on + strand at 316.999 kb on - strand at 316.999 kb on - strand at 317.022 kb on + strand at 317.022 kb on + strand at 317.023 kb on - strand at 317.023 kb on - strand at 317.101 kb on + strand at 317.146 kb on - strand at 317.155 kb on + strand at 317.156 kb on - strand at 317.158 kb on + strand at 317.158 kb on + strand at 317.158 kb on + strand at 317.159 kb on - strand at 317.159 kb on - strand at 317.177 kb on + strand at 317.227 kb on - strand at 317.291 kb on + strand at 317.292 kb on - strand at 317.292 kb on - strand at 317.707 kb on + strand, within PS417_01430 at 318.308 kb on - strand, within PS417_01430 at 318.897 kb on + strand, within PS417_01430 at 318.998 kb on + strand, within PS417_01430 at 319.299 kb on - strand, within PS417_01430 at 319.475 kb on + strand, within PS417_01430 at 319.555 kb on + strand at 319.555 kb on + strand at 319.556 kb on - strand at 319.844 kb on + strand, within PS417_01435
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 316,595 - PS417_01425 0.69 -0.8 316,851 + -2.0 316,852 - -0.4 316,852 - -0.4 316,852 - +1.6 316,998 + +0.5 316,998 + +0.6 316,999 - +0.0 316,999 - -1.2 317,022 + +0.1 317,022 + +2.7 317,023 - -0.4 317,023 - +2.1 317,101 + +0.3 317,146 - -0.1 317,155 + +0.8 317,156 - -0.8 317,158 + +0.1 317,158 + +0.0 317,158 + +0.1 317,159 - +0.2 317,159 - -0.5 317,177 + +0.2 317,227 - +0.6 317,291 + -0.0 317,292 - -0.7 317,292 - -1.5 317,707 + PS417_01430 0.13 +1.9 318,308 - PS417_01430 0.38 +1.6 318,897 + PS417_01430 0.63 -1.8 318,998 + PS417_01430 0.68 +2.2 319,299 - PS417_01430 0.80 +0.8 319,475 + PS417_01430 0.88 -0.1 319,555 + -0.7 319,555 + -1.6 319,556 - -0.9 319,844 + PS417_01435 0.12 +1.0
Or see this region's nucleotide sequence