Strain Fitness in Pseudomonas simiae WCS417 around PS417_01255

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01250 and PS417_01255 are separated by 22 nucleotidesPS417_01255 and PS417_01260 are separated by 25 nucleotidesPS417_01260 and PS417_01265 are separated by 203 nucleotides PS417_01250: PS417_01250 - ATP-dependent DNA helicase RecQ, at 271,501 to 273,438 _01250 PS417_01255: PS417_01255 - thioesterase, at 273,461 to 273,892 _01255 PS417_01260: PS417_01260 - hypothetical protein, at 273,918 to 274,397 _01260 PS417_01265: PS417_01265 - CbbBc protein, at 274,601 to 276,949 _01265 Position (kb) 273 274Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 272.717 kb on - strand, within PS417_01250at 272.737 kb on + strand, within PS417_01250at 272.738 kb on - strand, within PS417_01250at 272.909 kb on - strand, within PS417_01250at 272.963 kb on - strand, within PS417_01250at 272.997 kb on - strand, within PS417_01250at 273.011 kb on + strand, within PS417_01250at 273.013 kb on + strand, within PS417_01250at 273.014 kb on - strand, within PS417_01250at 273.014 kb on - strand, within PS417_01250at 273.014 kb on - strand, within PS417_01250at 273.116 kb on - strand, within PS417_01250at 273.219 kb on + strand, within PS417_01250at 273.250 kb on - strandat 273.391 kb on + strandat 273.391 kb on + strandat 273.496 kb on - strandat 273.539 kb on + strand, within PS417_01255at 273.539 kb on + strand, within PS417_01255at 273.539 kb on + strand, within PS417_01255at 273.540 kb on - strand, within PS417_01255at 273.540 kb on - strand, within PS417_01255at 273.563 kb on + strand, within PS417_01255at 273.564 kb on - strand, within PS417_01255at 273.564 kb on - strand, within PS417_01255at 273.564 kb on - strand, within PS417_01255at 273.566 kb on + strand, within PS417_01255at 273.567 kb on - strand, within PS417_01255at 273.593 kb on - strand, within PS417_01255at 273.593 kb on - strand, within PS417_01255at 273.593 kb on - strand, within PS417_01255at 273.593 kb on - strand, within PS417_01255at 273.593 kb on - strand, within PS417_01255at 273.596 kb on + strand, within PS417_01255at 273.597 kb on - strand, within PS417_01255at 273.597 kb on - strand, within PS417_01255at 273.671 kb on + strand, within PS417_01255at 273.672 kb on - strand, within PS417_01255at 273.737 kb on - strand, within PS417_01255at 273.737 kb on - strand, within PS417_01255at 273.737 kb on - strand, within PS417_01255at 273.737 kb on - strand, within PS417_01255at 273.737 kb on - strand, within PS417_01255at 273.750 kb on - strand, within PS417_01255at 273.905 kb on - strandat 273.905 kb on - strandat 273.958 kb on + strandat 273.995 kb on - strand, within PS417_01260at 274.054 kb on + strand, within PS417_01260at 274.054 kb on + strand, within PS417_01260at 274.054 kb on + strand, within PS417_01260at 274.054 kb on + strandat 274.055 kb on - strand, within PS417_01260at 274.055 kb on - strand, within PS417_01260at 274.055 kb on - strand, within PS417_01260at 274.055 kb on - strand, within PS417_01260at 274.055 kb on - strand, within PS417_01260at 274.059 kb on - strand, within PS417_01260at 274.135 kb on - strand, within PS417_01260at 274.290 kb on + strand, within PS417_01260at 274.291 kb on - strand, within PS417_01260at 274.291 kb on - strand, within PS417_01260at 274.399 kb on - strandat 274.522 kb on + strandat 274.523 kb on - strandat 274.603 kb on - strandat 274.603 kb on - strandat 274.603 kb on - strandat 274.678 kb on + strandat 274.734 kb on + strandat 274.735 kb on - strandat 274.760 kb on - strandat 274.853 kb on + strand, within PS417_01265

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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272,717 - PS417_01250 0.63 -0.6
272,737 + PS417_01250 0.64 -0.5
272,738 - PS417_01250 0.64 -0.8
272,909 - PS417_01250 0.73 -1.5
272,963 - PS417_01250 0.75 -2.9
272,997 - PS417_01250 0.77 +0.6
273,011 + PS417_01250 0.78 +0.3
273,013 + PS417_01250 0.78 -1.0
273,014 - PS417_01250 0.78 +1.0
273,014 - PS417_01250 0.78 +0.0
273,014 - PS417_01250 0.78 -0.7
273,116 - PS417_01250 0.83 -1.3
273,219 + PS417_01250 0.89 -0.6
273,250 - -0.7
273,391 + +0.2
273,391 + +0.3
273,496 - -0.0
273,539 + PS417_01255 0.18 +0.6
273,539 + PS417_01255 0.18 -0.8
273,539 + PS417_01255 0.18 +0.6
273,540 - PS417_01255 0.18 -1.4
273,540 - PS417_01255 0.18 -0.3
273,563 + PS417_01255 0.24 +0.5
273,564 - PS417_01255 0.24 -0.4
273,564 - PS417_01255 0.24 +1.7
273,564 - PS417_01255 0.24 +0.8
273,566 + PS417_01255 0.24 -0.5
273,567 - PS417_01255 0.25 -0.3
273,593 - PS417_01255 0.31 +1.2
273,593 - PS417_01255 0.31 +0.6
273,593 - PS417_01255 0.31 -0.1
273,593 - PS417_01255 0.31 +1.6
273,593 - PS417_01255 0.31 +1.8
273,596 + PS417_01255 0.31 +0.0
273,597 - PS417_01255 0.31 +0.9
273,597 - PS417_01255 0.31 -0.3
273,671 + PS417_01255 0.49 -0.5
273,672 - PS417_01255 0.49 -0.1
273,737 - PS417_01255 0.64 +0.7
273,737 - PS417_01255 0.64 +0.5
273,737 - PS417_01255 0.64 +0.5
273,737 - PS417_01255 0.64 -0.5
273,737 - PS417_01255 0.64 +0.2
273,750 - PS417_01255 0.67 -0.2
273,905 - -0.9
273,905 - +0.2
273,958 + +0.0
273,995 - PS417_01260 0.16 -1.0
274,054 + PS417_01260 0.28 +1.3
274,054 + PS417_01260 0.28 -0.3
274,054 + PS417_01260 0.28 -0.5
274,054 + +0.0
274,055 - PS417_01260 0.29 +0.4
274,055 - PS417_01260 0.29 -1.0
274,055 - PS417_01260 0.29 +0.6
274,055 - PS417_01260 0.29 -0.7
274,055 - PS417_01260 0.29 +0.4
274,059 - PS417_01260 0.29 -0.7
274,135 - PS417_01260 0.45 -1.8
274,290 + PS417_01260 0.78 -0.7
274,291 - PS417_01260 0.78 -0.0
274,291 - PS417_01260 0.78 -0.5
274,399 - -0.3
274,522 + -0.7
274,523 - +0.0
274,603 - -0.1
274,603 - -0.1
274,603 - +1.0
274,678 + +1.0
274,734 + -0.1
274,735 - +1.6
274,760 - -0.6
274,853 + PS417_01265 0.11 +1.0

Or see this region's nucleotide sequence