Strain Fitness in Pseudomonas simiae WCS417 around PS417_09165

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09155 and PS417_09160 are separated by 190 nucleotidesPS417_09160 and PS417_09165 overlap by 4 nucleotidesPS417_09165 and PS417_09170 overlap by 4 nucleotidesPS417_09170 and PS417_09175 are separated by 89 nucleotides PS417_09155: PS417_09155 - biopolymer transporter ExbD, at 1,990,515 to 1,990,922 _09155 PS417_09160: PS417_09160 - GNAT family acetyltransferase, at 1,991,113 to 1,991,667 _09160 PS417_09165: PS417_09165 - alkaline phosphatase, at 1,991,664 to 1,993,238 _09165 PS417_09170: PS417_09170 - alanyl-tRNA synthetase, at 1,993,235 to 1,993,861 _09170 PS417_09175: PS417_09175 - transcriptional regulator, at 1,993,951 to 1,994,895 _09175 Position (kb) 1991 1992 1993 1994Strain fitness (log2 ratio) -1 0 1 2 3at 1990.830 kb on + strand, within PS417_09155at 1990.990 kb on - strandat 1991.223 kb on + strand, within PS417_09160at 1991.223 kb on + strand, within PS417_09160at 1991.249 kb on - strand, within PS417_09160at 1991.249 kb on - strand, within PS417_09160at 1991.658 kb on - strandat 1991.769 kb on + strandat 1992.019 kb on - strandat 1992.213 kb on + strand, within PS417_09165at 1992.213 kb on + strand, within PS417_09165at 1992.213 kb on + strand, within PS417_09165at 1992.213 kb on + strand, within PS417_09165at 1992.226 kb on - strand, within PS417_09165at 1992.313 kb on - strand, within PS417_09165at 1992.396 kb on + strand, within PS417_09165at 1992.396 kb on + strand, within PS417_09165at 1992.397 kb on - strand, within PS417_09165at 1992.397 kb on - strand, within PS417_09165at 1992.474 kb on + strand, within PS417_09165at 1992.475 kb on - strand, within PS417_09165at 1992.478 kb on - strand, within PS417_09165at 1992.486 kb on - strandat 1992.486 kb on - strand, within PS417_09165at 1992.486 kb on - strand, within PS417_09165at 1992.641 kb on + strand, within PS417_09165at 1992.641 kb on + strand, within PS417_09165at 1992.642 kb on - strand, within PS417_09165at 1992.843 kb on + strand, within PS417_09165at 1992.843 kb on + strand, within PS417_09165at 1992.843 kb on + strand, within PS417_09165at 1992.843 kb on + strand, within PS417_09165at 1992.844 kb on - strand, within PS417_09165at 1993.098 kb on + strandat 1993.656 kb on + strand, within PS417_09170at 1993.656 kb on + strand, within PS417_09170at 1993.656 kb on + strand, within PS417_09170at 1993.656 kb on + strand, within PS417_09170at 1993.657 kb on - strand, within PS417_09170at 1993.657 kb on - strandat 1993.657 kb on - strand, within PS417_09170at 1993.695 kb on - strand, within PS417_09170at 1993.815 kb on - strandat 1993.866 kb on + strandat 1993.866 kb on + strandat 1993.866 kb on + strandat 1993.867 kb on - strandat 1993.867 kb on - strandat 1993.867 kb on - strandat 1993.897 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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1,990,830 + PS417_09155 0.77 -1.1
1,990,990 - -1.1
1,991,223 + PS417_09160 0.20 -1.2
1,991,223 + PS417_09160 0.20 +0.4
1,991,249 - PS417_09160 0.25 +0.8
1,991,249 - PS417_09160 0.25 +1.5
1,991,658 - +0.3
1,991,769 + -0.3
1,992,019 - -0.8
1,992,213 + PS417_09165 0.35 -1.7
1,992,213 + PS417_09165 0.35 -1.1
1,992,213 + PS417_09165 0.35 -0.6
1,992,213 + PS417_09165 0.35 +1.3
1,992,226 - PS417_09165 0.36 +0.2
1,992,313 - PS417_09165 0.41 -1.1
1,992,396 + PS417_09165 0.46 +0.5
1,992,396 + PS417_09165 0.46 +2.0
1,992,397 - PS417_09165 0.47 +0.7
1,992,397 - PS417_09165 0.47 +1.2
1,992,474 + PS417_09165 0.51 -1.1
1,992,475 - PS417_09165 0.51 -0.5
1,992,478 - PS417_09165 0.52 +1.3
1,992,486 - -0.8
1,992,486 - PS417_09165 0.52 -0.6
1,992,486 - PS417_09165 0.52 +0.5
1,992,641 + PS417_09165 0.62 -0.4
1,992,641 + PS417_09165 0.62 +0.5
1,992,642 - PS417_09165 0.62 -0.2
1,992,843 + PS417_09165 0.75 +0.8
1,992,843 + PS417_09165 0.75 +1.2
1,992,843 + PS417_09165 0.75 +0.8
1,992,843 + PS417_09165 0.75 +1.9
1,992,844 - PS417_09165 0.75 -1.1
1,993,098 + +0.4
1,993,656 + PS417_09170 0.67 -0.5
1,993,656 + PS417_09170 0.67 +0.2
1,993,656 + PS417_09170 0.67 -0.7
1,993,656 + PS417_09170 0.67 -0.6
1,993,657 - PS417_09170 0.67 +0.5
1,993,657 - -1.3
1,993,657 - PS417_09170 0.67 +0.2
1,993,695 - PS417_09170 0.73 +0.4
1,993,815 - -0.0
1,993,866 + -0.4
1,993,866 + -0.5
1,993,866 + +3.1
1,993,867 - +0.1
1,993,867 - +2.8
1,993,867 - -0.4
1,993,897 - +1.2

Or see this region's nucleotide sequence