Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08615 and PS417_08620 are separated by 91 nucleotides PS417_08620 and PS417_08625 overlap by 4 nucleotides PS417_08625 and PS417_08630 are separated by 2 nucleotides PS417_08630 and PS417_08635 are separated by 342 nucleotides
PS417_08615: PS417_08615 - diguanylate phosphodiesterase, at 1,882,975 to 1,884,138
_08615
PS417_08620: PS417_08620 - hypothetical protein, at 1,884,230 to 1,884,571
_08620
PS417_08625: PS417_08625 - membrane protein, at 1,884,568 to 1,884,951
_08625
PS417_08630: PS417_08630 - membrane protein, at 1,884,954 to 1,885,268
_08630
PS417_08635: PS417_08635 - ammonium transporter, at 1,885,611 to 1,886,819
_08635
Position (kb) 1884
1885 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1884.149 kb on + strand at 1884.149 kb on + strand at 1884.150 kb on - strand at 1884.421 kb on + strand, within PS417_08620 at 1884.686 kb on + strand, within PS417_08625 at 1884.687 kb on - strand, within PS417_08625 at 1885.272 kb on + strand at 1885.273 kb on - strand at 1885.432 kb on + strand at 1885.436 kb on + strand at 1885.514 kb on + strand at 1885.667 kb on + strand at 1885.787 kb on + strand, within PS417_08635 at 1885.788 kb on - strand, within PS417_08635 at 1885.793 kb on + strand, within PS417_08635 at 1885.793 kb on + strand, within PS417_08635 at 1885.793 kb on + strand, within PS417_08635 at 1885.803 kb on + strand, within PS417_08635 at 1885.804 kb on - strand, within PS417_08635 at 1885.813 kb on + strand, within PS417_08635 at 1885.813 kb on + strand, within PS417_08635 at 1885.831 kb on - strand, within PS417_08635
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 1,884,149 + -0.1 1,884,149 + +2.6 1,884,150 - -0.9 1,884,421 + PS417_08620 0.56 +0.2 1,884,686 + PS417_08625 0.31 -0.4 1,884,687 - PS417_08625 0.31 +1.5 1,885,272 + -0.2 1,885,273 - +0.0 1,885,432 + -0.2 1,885,436 + -0.7 1,885,514 + -0.0 1,885,667 + +1.3 1,885,787 + PS417_08635 0.15 +0.1 1,885,788 - PS417_08635 0.15 +0.7 1,885,793 + PS417_08635 0.15 -1.9 1,885,793 + PS417_08635 0.15 -1.1 1,885,793 + PS417_08635 0.15 -0.2 1,885,803 + PS417_08635 0.16 +0.9 1,885,804 - PS417_08635 0.16 +0.5 1,885,813 + PS417_08635 0.17 +0.6 1,885,813 + PS417_08635 0.17 +0.2 1,885,831 - PS417_08635 0.18 +0.6
Or see this region's nucleotide sequence