Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00630 and PS417_00635 are separated by 1 nucleotides PS417_00635 and PS417_00640 are separated by 11 nucleotides PS417_00640 and PS417_00645 are separated by 99 nucleotides
PS417_00630: PS417_00630 - nitrate ABC transporter substrate-binding protein, at 129,155 to 130,180
_00630
PS417_00635: PS417_00635 - sulfonate ABC transporter ATP-binding protein, at 130,182 to 131,033
_00635
PS417_00640: PS417_00640 - ABC transporter permease, at 131,045 to 131,893
_00640
PS417_00645: PS417_00645 - hypothetical protein, at 131,993 to 132,619
_00645
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 129.293 kb on + strand, within PS417_00630 at 129.294 kb on - strand, within PS417_00630 at 129.642 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.831 kb on - strand, within PS417_00630 at 129.831 kb on - strand, within PS417_00630 at 129.906 kb on - strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 130.142 kb on + strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.398 kb on - strand, within PS417_00635 at 130.545 kb on - strand, within PS417_00635 at 130.587 kb on + strand, within PS417_00635 at 130.905 kb on + strand, within PS417_00635 at 130.905 kb on + strand, within PS417_00635 at 131.028 kb on + strand at 131.029 kb on - strand at 131.058 kb on - strand at 131.058 kb on - strand at 131.070 kb on + strand at 131.071 kb on - strand at 131.071 kb on - strand at 131.206 kb on + strand, within PS417_00640 at 131.321 kb on + strand, within PS417_00640 at 131.321 kb on + strand, within PS417_00640 at 131.585 kb on + strand, within PS417_00640 at 131.585 kb on + strand, within PS417_00640 at 131.747 kb on + strand, within PS417_00640 at 131.747 kb on + strand, within PS417_00640 at 131.748 kb on - strand, within PS417_00640 at 131.748 kb on - strand, within PS417_00640 at 131.748 kb on - strand, within PS417_00640 at 131.774 kb on + strand, within PS417_00640 at 131.774 kb on + strand, within PS417_00640 at 131.775 kb on - strand, within PS417_00640 at 131.775 kb on - strand, within PS417_00640 at 131.775 kb on - strand, within PS417_00640 at 131.987 kb on - strand at 132.024 kb on + strand at 132.024 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 129,293 + PS417_00630 0.13 -0.2 129,294 - PS417_00630 0.14 +0.5 129,642 - PS417_00630 0.47 -0.2 129,693 - PS417_00630 0.52 +0.0 129,693 - PS417_00630 0.52 +1.0 129,693 - PS417_00630 0.52 +0.1 129,831 - PS417_00630 0.66 +1.1 129,831 - PS417_00630 0.66 -0.9 129,906 - PS417_00630 0.73 +2.0 129,980 + PS417_00630 0.80 -0.0 129,980 + PS417_00630 0.80 +4.3 129,980 + PS417_00630 0.80 +0.8 129,980 + PS417_00630 0.80 -0.2 129,981 - PS417_00630 0.81 +0.9 129,981 - PS417_00630 0.81 -0.7 129,981 - PS417_00630 0.81 +2.1 130,142 + -0.5 130,143 - -0.1 130,143 - -0.5 130,143 - -0.4 130,143 - +0.2 130,143 - +0.1 130,398 - PS417_00635 0.25 -0.7 130,545 - PS417_00635 0.43 +1.5 130,587 + PS417_00635 0.48 +2.6 130,905 + PS417_00635 0.85 -0.7 130,905 + PS417_00635 0.85 +0.3 131,028 + -0.3 131,029 - +1.0 131,058 - -0.4 131,058 - -0.4 131,070 + -0.4 131,071 - -0.6 131,071 - -0.3 131,206 + PS417_00640 0.19 -1.2 131,321 + PS417_00640 0.33 -1.0 131,321 + PS417_00640 0.33 -0.6 131,585 + PS417_00640 0.64 +2.4 131,585 + PS417_00640 0.64 +0.5 131,747 + PS417_00640 0.83 +0.2 131,747 + PS417_00640 0.83 -0.6 131,748 - PS417_00640 0.83 +0.0 131,748 - PS417_00640 0.83 +1.9 131,748 - PS417_00640 0.83 +0.4 131,774 + PS417_00640 0.86 +0.6 131,774 + PS417_00640 0.86 +1.6 131,775 - PS417_00640 0.86 -2.3 131,775 - PS417_00640 0.86 +0.0 131,775 - PS417_00640 0.86 -0.1 131,987 - +0.6 132,024 + -0.3 132,024 + +0.2
Or see this region's nucleotide sequence