Strain Fitness in Pseudomonas putida KT2440 around PP_0821

Experiment: LB outgrowth control more dilute start

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0820 and PP_5460 are separated by 86 nucleotidesPP_5460 and PP_0821 overlap by 4 nucleotidesPP_0821 and PP_0822 are separated by 125 nucleotides PP_0820: PP_0820 - GCN5-related N-acetyltransferase, at 958,546 to 959,109 _0820 PP_5460: PP_5460 - conserved membrane protein of unknown function, at 959,196 to 959,735 _5460 PP_0821: PP_0821 - conserved exported protein of unknown function, at 959,732 to 960,142 _0821 PP_0822: PP_0822 - tRNA 2-selenouridine synthase, at 960,268 to 961,380 _0822 Position (kb) 959 960 961Strain fitness (log2 ratio) -3 -2 -1 0 1at 958.741 kb on + strand, within PP_0820at 958.742 kb on - strand, within PP_0820at 958.774 kb on + strand, within PP_0820at 958.774 kb on + strand, within PP_0820at 958.775 kb on - strand, within PP_0820at 958.888 kb on + strand, within PP_0820at 958.888 kb on + strand, within PP_0820at 958.889 kb on - strand, within PP_0820at 958.889 kb on - strand, within PP_0820at 958.889 kb on - strand, within PP_0820at 958.889 kb on - strand, within PP_0820at 958.889 kb on - strand, within PP_0820at 958.889 kb on - strand, within PP_0820at 959.077 kb on + strandat 959.077 kb on + strandat 959.078 kb on - strandat 959.078 kb on - strandat 959.102 kb on + strandat 959.102 kb on + strandat 959.103 kb on - strandat 959.115 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.166 kb on - strandat 959.166 kb on - strandat 959.216 kb on + strandat 959.216 kb on + strandat 959.232 kb on + strandat 959.232 kb on + strandat 959.232 kb on + strandat 959.232 kb on + strandat 959.282 kb on + strand, within PP_5460at 959.283 kb on - strand, within PP_5460at 959.338 kb on - strand, within PP_5460at 959.430 kb on + strand, within PP_5460at 959.431 kb on - strand, within PP_5460at 959.481 kb on + strand, within PP_5460at 959.482 kb on - strand, within PP_5460at 959.482 kb on - strand, within PP_5460at 959.520 kb on + strand, within PP_5460at 959.521 kb on - strandat 959.655 kb on + strand, within PP_5460at 959.655 kb on + strand, within PP_5460at 959.655 kb on + strand, within PP_5460at 959.656 kb on - strand, within PP_5460at 959.752 kb on + strandat 959.769 kb on - strandat 959.769 kb on - strandat 959.769 kb on - strandat 959.822 kb on + strand, within PP_0821at 960.006 kb on - strand, within PP_0821at 960.034 kb on - strand, within PP_0821at 960.034 kb on - strand, within PP_0821at 960.034 kb on - strand, within PP_0821at 960.034 kb on - strand, within PP_0821at 960.127 kb on + strandat 960.261 kb on - strandat 960.269 kb on + strandat 960.270 kb on - strandat 960.270 kb on - strandat 960.305 kb on + strandat 960.306 kb on - strandat 960.306 kb on - strandat 960.314 kb on - strandat 960.374 kb on + strandat 960.374 kb on + strandat 960.374 kb on + strandat 960.374 kb on + strandat 960.374 kb on + strandat 960.374 kb on + strandat 960.374 kb on + strandat 960.374 kb on + strandat 960.374 kb on + strandat 960.374 kb on + strandat 960.374 kb on + strandat 960.375 kb on - strandat 960.375 kb on - strandat 960.375 kb on - strandat 960.375 kb on - strandat 960.386 kb on + strand, within PP_0822at 960.387 kb on - strand, within PP_0822at 960.389 kb on + strand, within PP_0822at 960.390 kb on - strand, within PP_0822at 960.430 kb on + strand, within PP_0822at 960.430 kb on + strand, within PP_0822at 960.515 kb on + strand, within PP_0822at 960.516 kb on - strand, within PP_0822at 960.519 kb on + strand, within PP_0822at 960.519 kb on + strand, within PP_0822at 960.519 kb on + strand, within PP_0822at 960.519 kb on + strand, within PP_0822at 960.519 kb on + strand, within PP_0822at 960.520 kb on - strand, within PP_0822at 960.614 kb on + strand, within PP_0822at 960.692 kb on + strand, within PP_0822at 960.692 kb on + strand, within PP_0822at 960.693 kb on - strand, within PP_0822at 960.978 kb on + strand, within PP_0822at 960.996 kb on + strand, within PP_0822at 960.996 kb on + strand, within PP_0822at 960.996 kb on + strand, within PP_0822at 960.996 kb on + strand, within PP_0822at 960.997 kb on - strand, within PP_0822at 961.010 kb on + strand, within PP_0822at 961.039 kb on - strandat 961.039 kb on - strand, within PP_0822

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Per-strain Table

Position Strand Gene LocusTag Fraction LB outgrowth control more dilute start
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958,741 + PP_0820 0.35 +0.0
958,742 - PP_0820 0.35 -0.5
958,774 + PP_0820 0.40 +0.7
958,774 + PP_0820 0.40 -0.5
958,775 - PP_0820 0.41 -0.0
958,888 + PP_0820 0.61 +0.1
958,888 + PP_0820 0.61 -0.4
958,889 - PP_0820 0.61 +1.0
958,889 - PP_0820 0.61 -0.3
958,889 - PP_0820 0.61 +0.0
958,889 - PP_0820 0.61 -1.2
958,889 - PP_0820 0.61 -0.4
958,889 - PP_0820 0.61 -0.4
959,077 + -0.4
959,077 + +0.8
959,078 - +0.1
959,078 - +0.2
959,102 + +0.4
959,102 + +0.3
959,103 - -1.6
959,115 + -0.7
959,165 + +0.7
959,165 + -0.5
959,165 + -0.3
959,165 + -0.0
959,165 + -0.3
959,165 + -0.5
959,166 - -0.3
959,166 - -2.6
959,216 + +1.2
959,216 + +0.4
959,232 + +0.3
959,232 + -0.4
959,232 + -0.2
959,232 + -0.6
959,282 + PP_5460 0.16 +0.3
959,283 - PP_5460 0.16 -0.1
959,338 - PP_5460 0.26 +0.8
959,430 + PP_5460 0.43 +0.4
959,431 - PP_5460 0.44 -0.1
959,481 + PP_5460 0.53 +0.9
959,482 - PP_5460 0.53 -0.1
959,482 - PP_5460 0.53 +0.2
959,520 + PP_5460 0.60 -0.4
959,521 - -0.4
959,655 + PP_5460 0.85 +0.4
959,655 + PP_5460 0.85 -0.4
959,655 + PP_5460 0.85 -0.3
959,656 - PP_5460 0.85 -0.9
959,752 + +0.2
959,769 - -0.0
959,769 - +0.3
959,769 - +1.0
959,822 + PP_0821 0.22 +0.9
960,006 - PP_0821 0.67 -0.2
960,034 - PP_0821 0.73 -0.4
960,034 - PP_0821 0.73 +0.4
960,034 - PP_0821 0.73 +0.8
960,034 - PP_0821 0.73 +0.7
960,127 + +0.1
960,261 - -1.2
960,269 + +0.5
960,270 - +0.4
960,270 - -0.9
960,305 + -0.4
960,306 - -0.5
960,306 - -0.1
960,314 - -0.1
960,374 + -0.2
960,374 + -3.5
960,374 + +0.1
960,374 + +0.5
960,374 + +0.4
960,374 + -1.2
960,374 + +0.9
960,374 + -0.6
960,374 + -1.5
960,374 + -0.3
960,374 + -1.7
960,375 - +0.1
960,375 - -1.8
960,375 - +0.2
960,375 - +0.2
960,386 + PP_0822 0.11 -0.4
960,387 - PP_0822 0.11 +1.0
960,389 + PP_0822 0.11 +0.4
960,390 - PP_0822 0.11 -0.1
960,430 + PP_0822 0.15 -0.3
960,430 + PP_0822 0.15 -0.3
960,515 + PP_0822 0.22 -0.4
960,516 - PP_0822 0.22 -1.3
960,519 + PP_0822 0.23 -1.5
960,519 + PP_0822 0.23 -0.4
960,519 + PP_0822 0.23 +0.6
960,519 + PP_0822 0.23 -0.7
960,519 + PP_0822 0.23 -0.2
960,520 - PP_0822 0.23 -0.9
960,614 + PP_0822 0.31 +0.3
960,692 + PP_0822 0.38 +0.5
960,692 + PP_0822 0.38 -0.4
960,693 - PP_0822 0.38 -0.2
960,978 + PP_0822 0.64 -0.8
960,996 + PP_0822 0.65 +0.1
960,996 + PP_0822 0.65 +1.0
960,996 + PP_0822 0.65 -0.6
960,996 + PP_0822 0.65 +0.2
960,997 - PP_0822 0.65 -0.2
961,010 + PP_0822 0.67 +0.5
961,039 - +1.2
961,039 - PP_0822 0.69 -0.3

Or see this region's nucleotide sequence