Experiment: LB outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0804 and PP_0805 overlap by 4 nucleotides PP_0805 and PP_0806 are separated by 63 nucleotides
PP_0804: PP_0804 - Protein secretion ABC efflux system, permease and ATP-binding protein, at 923,024 to 925,192
_0804
PP_0805: PP_0805 - Outer membrane efflux protein, at 925,189 to 926,625
_0805
PP_0806: PP_0806 - putative Surface adhesion protein, at 926,689 to 945,621
_0806
Position (kb) 925
926
927 Strain fitness (log2 ratio) -1
0
1
2 at 924.552 kb on + strand, within PP_0804 at 924.553 kb on - strand, within PP_0804 at 924.553 kb on - strand, within PP_0804 at 924.591 kb on + strand, within PP_0804 at 924.591 kb on + strand, within PP_0804 at 924.686 kb on + strand, within PP_0804 at 924.687 kb on - strand, within PP_0804 at 924.726 kb on + strand, within PP_0804 at 924.727 kb on - strand, within PP_0804 at 924.788 kb on - strand, within PP_0804 at 925.049 kb on - strand at 925.061 kb on + strand at 925.061 kb on + strand at 925.262 kb on + strand at 925.262 kb on + strand at 925.262 kb on + strand at 925.263 kb on - strand at 925.328 kb on + strand at 925.328 kb on + strand at 925.375 kb on + strand, within PP_0805 at 925.376 kb on - strand, within PP_0805 at 925.386 kb on - strand, within PP_0805 at 925.386 kb on - strand, within PP_0805 at 925.592 kb on + strand, within PP_0805 at 925.592 kb on + strand at 925.593 kb on - strand, within PP_0805 at 925.593 kb on - strand, within PP_0805 at 925.593 kb on - strand, within PP_0805 at 925.593 kb on - strand, within PP_0805 at 925.616 kb on + strand, within PP_0805 at 925.661 kb on + strand, within PP_0805 at 925.662 kb on - strand, within PP_0805 at 925.677 kb on - strand, within PP_0805 at 925.707 kb on + strand, within PP_0805 at 925.712 kb on + strand, within PP_0805 at 925.713 kb on - strand, within PP_0805 at 925.910 kb on + strand, within PP_0805 at 925.923 kb on - strand, within PP_0805 at 925.969 kb on + strand, within PP_0805 at 925.970 kb on - strand, within PP_0805 at 926.102 kb on + strand, within PP_0805 at 926.102 kb on + strand, within PP_0805 at 926.103 kb on - strand, within PP_0805 at 926.103 kb on - strand, within PP_0805 at 926.211 kb on - strand, within PP_0805 at 926.309 kb on + strand, within PP_0805 at 926.313 kb on - strand at 926.351 kb on + strand, within PP_0805 at 926.352 kb on - strand, within PP_0805 at 926.352 kb on - strand, within PP_0805 at 926.352 kb on - strand, within PP_0805 at 926.530 kb on + strand at 926.530 kb on + strand at 926.530 kb on + strand at 926.530 kb on + strand at 926.530 kb on + strand at 926.531 kb on - strand at 926.531 kb on - strand at 926.531 kb on - strand at 926.531 kb on - strand at 926.531 kb on - strand at 926.531 kb on - strand at 926.531 kb on - strand at 926.531 kb on - strand at 926.531 kb on - strand at 926.531 kb on - strand at 926.532 kb on + strand at 926.532 kb on + strand at 926.533 kb on - strand at 926.533 kb on - strand at 926.533 kb on - strand at 926.533 kb on - strand at 926.627 kb on + strand at 926.627 kb on + strand at 926.627 kb on + strand at 926.636 kb on + strand at 926.637 kb on - strand at 926.663 kb on - strand at 926.679 kb on + strand at 926.680 kb on - strand at 926.750 kb on + strand at 926.750 kb on + strand at 926.750 kb on + strand at 926.751 kb on - strand at 926.757 kb on + strand at 926.759 kb on + strand at 926.760 kb on - strand at 927.289 kb on + strand at 927.289 kb on + strand at 927.289 kb on + strand at 927.289 kb on + strand at 927.290 kb on - strand at 927.290 kb on - strand at 927.290 kb on - strand at 927.296 kb on + strand at 927.353 kb on + strand at 927.353 kb on + strand at 927.353 kb on + strand at 927.353 kb on + strand at 927.353 kb on + strand at 927.353 kb on + strand at 927.353 kb on + strand at 927.354 kb on - strand at 927.354 kb on - strand at 927.359 kb on + strand at 927.359 kb on + strand at 927.360 kb on - strand at 927.360 kb on - strand at 927.360 kb on - strand at 927.360 kb on - strand at 927.360 kb on - strand at 927.392 kb on + strand at 927.393 kb on - strand at 927.419 kb on + strand at 927.434 kb on + strand at 927.434 kb on + strand at 927.434 kb on + strand at 927.435 kb on - strand at 927.435 kb on - strand at 927.435 kb on - strand at 927.548 kb on + strand at 927.548 kb on + strand at 927.548 kb on + strand at 927.549 kb on - strand at 927.549 kb on - strand at 927.549 kb on - strand at 927.616 kb on + strand at 927.616 kb on + strand at 927.616 kb on + strand at 927.617 kb on - strand at 927.617 kb on - strand at 927.617 kb on - strand at 927.617 kb on - strand at 927.623 kb on + strand at 927.623 kb on + strand at 927.624 kb on - strand at 927.624 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB outgrowth control remove 924,552 + PP_0804 0.70 +0.1 924,553 - PP_0804 0.70 +0.3 924,553 - PP_0804 0.70 +0.9 924,591 + PP_0804 0.72 +0.6 924,591 + PP_0804 0.72 +0.3 924,686 + PP_0804 0.77 +0.9 924,687 - PP_0804 0.77 +0.1 924,726 + PP_0804 0.78 +0.3 924,727 - PP_0804 0.79 +0.6 924,788 - PP_0804 0.81 -0.2 925,049 - -0.3 925,061 + +0.7 925,061 + +0.2 925,262 + +0.3 925,262 + +0.4 925,262 + -0.0 925,263 - +0.5 925,328 + +1.0 925,328 + -0.7 925,375 + PP_0805 0.13 -0.7 925,376 - PP_0805 0.13 +0.4 925,386 - PP_0805 0.14 -0.3 925,386 - PP_0805 0.14 +0.5 925,592 + PP_0805 0.28 +0.2 925,592 + +2.0 925,593 - PP_0805 0.28 +0.1 925,593 - PP_0805 0.28 +1.2 925,593 - PP_0805 0.28 +0.7 925,593 - PP_0805 0.28 +2.2 925,616 + PP_0805 0.30 +0.2 925,661 + PP_0805 0.33 +0.0 925,662 - PP_0805 0.33 +0.1 925,677 - PP_0805 0.34 +0.2 925,707 + PP_0805 0.36 -0.3 925,712 + PP_0805 0.36 +2.0 925,713 - PP_0805 0.36 +0.2 925,910 + PP_0805 0.50 +0.5 925,923 - PP_0805 0.51 +0.3 925,969 + PP_0805 0.54 +0.5 925,970 - PP_0805 0.54 -0.3 926,102 + PP_0805 0.64 +0.3 926,102 + PP_0805 0.64 +0.5 926,103 - PP_0805 0.64 +0.2 926,103 - PP_0805 0.64 +0.0 926,211 - PP_0805 0.71 -0.6 926,309 + PP_0805 0.78 +0.8 926,313 - +0.4 926,351 + PP_0805 0.81 +1.2 926,352 - PP_0805 0.81 +0.1 926,352 - PP_0805 0.81 +0.9 926,352 - PP_0805 0.81 +0.4 926,530 + +0.4 926,530 + +0.5 926,530 + -1.0 926,530 + +0.1 926,530 + +0.7 926,531 - +0.6 926,531 - +0.6 926,531 - +0.1 926,531 - +1.5 926,531 - -0.1 926,531 - +1.2 926,531 - +0.3 926,531 - -0.6 926,531 - -1.0 926,531 - +1.2 926,532 + -0.1 926,532 + -0.1 926,533 - -0.2 926,533 - -0.1 926,533 - +0.7 926,533 - +1.4 926,627 + +0.2 926,627 + +0.6 926,627 + -0.3 926,636 + +0.1 926,637 - -0.4 926,663 - -0.1 926,679 + -1.1 926,680 - -0.8 926,750 + +0.9 926,750 + -0.4 926,750 + +0.8 926,751 - -0.3 926,757 + +0.3 926,759 + +0.5 926,760 - +0.6 927,289 + +0.1 927,289 + +0.7 927,289 + +1.1 927,289 + +0.4 927,290 - +0.5 927,290 - -0.4 927,290 - +0.6 927,296 + +0.6 927,353 + +0.2 927,353 + +0.4 927,353 + +0.1 927,353 + +0.2 927,353 + -0.2 927,353 + +0.0 927,353 + -0.0 927,354 - +0.1 927,354 - +0.6 927,359 + +0.5 927,359 + +0.6 927,360 - -1.4 927,360 - +0.2 927,360 - +0.2 927,360 - +0.5 927,360 - -0.4 927,392 + -0.8 927,393 - -0.2 927,419 + +0.3 927,434 + +1.1 927,434 + +0.5 927,434 + +0.7 927,435 - +0.6 927,435 - -0.3 927,435 - +0.3 927,548 + +0.4 927,548 + +0.0 927,548 + +0.6 927,549 - +0.2 927,549 - -0.3 927,549 - +0.4 927,616 + +0.8 927,616 + +0.4 927,616 + +0.2 927,617 - -0.0 927,617 - +0.0 927,617 - +0.5 927,617 - -0.1 927,623 + +0.2 927,623 + +0.8 927,624 - +0.7 927,624 - +0.1
Or see this region's nucleotide sequence