Strain Fitness in Pseudomonas putida KT2440 around PP_5253

Experiment: LB outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5252 and PP_5253 are separated by 199 nucleotidesPP_5253 and PP_5254 are separated by 40 nucleotidesPP_5254 and PP_5255 are separated by 87 nucleotides PP_5252: PP_5252 - conserved exported protein of unknown function, at 5,995,049 to 5,997,031 _5252 PP_5253: PP_5253 - Arylesterase, at 5,997,231 to 5,998,049 _5253 PP_5254: PP_5254 - conserved protein of unknown function, at 5,998,090 to 5,998,428 _5254 PP_5255: PP_5255 - putative hydrolase, at 5,998,516 to 5,999,145 _5255 Position (kb) 5997 5998 5999Strain fitness (log2 ratio) -1 0 1 2at 5996.268 kb on + strand, within PP_5252at 5996.269 kb on - strand, within PP_5252at 5996.284 kb on + strand, within PP_5252at 5996.284 kb on + strand, within PP_5252at 5996.285 kb on - strand, within PP_5252at 5996.308 kb on - strand, within PP_5252at 5996.538 kb on + strand, within PP_5252at 5996.538 kb on + strand, within PP_5252at 5996.539 kb on - strand, within PP_5252at 5996.579 kb on - strand, within PP_5252at 5996.661 kb on + strand, within PP_5252at 5996.661 kb on + strand, within PP_5252at 5996.662 kb on - strand, within PP_5252at 5997.187 kb on - strandat 5997.198 kb on - strandat 5997.233 kb on - strandat 5997.310 kb on + strandat 5997.310 kb on + strandat 5997.311 kb on - strandat 5997.311 kb on - strandat 5997.311 kb on - strandat 5997.311 kb on - strandat 5997.311 kb on - strandat 5997.738 kb on - strand, within PP_5253at 5997.739 kb on + strand, within PP_5253at 5997.740 kb on - strand, within PP_5253at 5997.842 kb on - strand, within PP_5253at 5997.842 kb on - strand, within PP_5253at 5998.012 kb on + strandat 5998.012 kb on + strandat 5998.012 kb on + strandat 5998.050 kb on - strandat 5998.055 kb on + strandat 5998.056 kb on - strandat 5998.139 kb on + strand, within PP_5254at 5998.139 kb on + strand, within PP_5254at 5998.139 kb on + strand, within PP_5254at 5998.139 kb on + strand, within PP_5254at 5998.139 kb on + strand, within PP_5254at 5998.140 kb on - strand, within PP_5254at 5998.140 kb on - strand, within PP_5254at 5998.140 kb on - strand, within PP_5254at 5998.274 kb on + strand, within PP_5254at 5998.274 kb on + strand, within PP_5254at 5998.274 kb on + strand, within PP_5254at 5998.357 kb on + strand, within PP_5254at 5998.357 kb on + strand, within PP_5254at 5998.358 kb on - strand, within PP_5254at 5998.358 kb on - strand, within PP_5254at 5998.358 kb on - strand, within PP_5254at 5998.358 kb on - strand, within PP_5254at 5998.358 kb on - strand, within PP_5254at 5998.464 kb on - strandat 5998.464 kb on - strandat 5998.464 kb on - strandat 5998.464 kb on - strandat 5998.464 kb on - strandat 5998.518 kb on - strandat 5998.518 kb on - strandat 5998.541 kb on + strandat 5998.542 kb on - strandat 5998.786 kb on + strand, within PP_5255at 5998.787 kb on - strand, within PP_5255at 5998.788 kb on - strand, within PP_5255at 5998.901 kb on + strand, within PP_5255at 5998.901 kb on + strand, within PP_5255at 5998.974 kb on + strand, within PP_5255at 5998.974 kb on + strand, within PP_5255at 5998.975 kb on - strand, within PP_5255at 5998.975 kb on - strand, within PP_5255

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Per-strain Table

Position Strand Gene LocusTag Fraction LB outgrowth control
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5,996,268 + PP_5252 0.61 +0.8
5,996,269 - PP_5252 0.62 +0.1
5,996,284 + PP_5252 0.62 +0.8
5,996,284 + PP_5252 0.62 -0.8
5,996,285 - PP_5252 0.62 -0.1
5,996,308 - PP_5252 0.63 +0.1
5,996,538 + PP_5252 0.75 -0.6
5,996,538 + PP_5252 0.75 -0.4
5,996,539 - PP_5252 0.75 +0.2
5,996,579 - PP_5252 0.77 -0.2
5,996,661 + PP_5252 0.81 -0.9
5,996,661 + PP_5252 0.81 -0.4
5,996,662 - PP_5252 0.81 -0.1
5,997,187 - +0.1
5,997,198 - +0.0
5,997,233 - -0.5
5,997,310 + -1.0
5,997,310 + +0.4
5,997,311 - -0.1
5,997,311 - -0.7
5,997,311 - -0.6
5,997,311 - +0.0
5,997,311 - -0.2
5,997,738 - PP_5253 0.62 +0.4
5,997,739 + PP_5253 0.62 -1.1
5,997,740 - PP_5253 0.62 +2.1
5,997,842 - PP_5253 0.75 +0.4
5,997,842 - PP_5253 0.75 +0.3
5,998,012 + +0.7
5,998,012 + -0.6
5,998,012 + +0.2
5,998,050 - -1.4
5,998,055 + +0.5
5,998,056 - +0.2
5,998,139 + PP_5254 0.14 +1.1
5,998,139 + PP_5254 0.14 -0.2
5,998,139 + PP_5254 0.14 +0.5
5,998,139 + PP_5254 0.14 -0.5
5,998,139 + PP_5254 0.14 +0.1
5,998,140 - PP_5254 0.15 -0.2
5,998,140 - PP_5254 0.15 +0.8
5,998,140 - PP_5254 0.15 -0.1
5,998,274 + PP_5254 0.54 +1.1
5,998,274 + PP_5254 0.54 +0.4
5,998,274 + PP_5254 0.54 +0.1
5,998,357 + PP_5254 0.79 +0.6
5,998,357 + PP_5254 0.79 +0.2
5,998,358 - PP_5254 0.79 +0.2
5,998,358 - PP_5254 0.79 +0.1
5,998,358 - PP_5254 0.79 -0.1
5,998,358 - PP_5254 0.79 -0.6
5,998,358 - PP_5254 0.79 +0.2
5,998,464 - +0.3
5,998,464 - -0.8
5,998,464 - +0.9
5,998,464 - +0.3
5,998,464 - -0.5
5,998,518 - -1.0
5,998,518 - +0.5
5,998,541 + +1.3
5,998,542 - -0.1
5,998,786 + PP_5255 0.43 +0.1
5,998,787 - PP_5255 0.43 +0.1
5,998,788 - PP_5255 0.43 -0.1
5,998,901 + PP_5255 0.61 +0.9
5,998,901 + PP_5255 0.61 +0.2
5,998,974 + PP_5255 0.73 -0.3
5,998,974 + PP_5255 0.73 +0.1
5,998,975 - PP_5255 0.73 +0.5
5,998,975 - PP_5255 0.73 -1.4

Or see this region's nucleotide sequence