Experiment: Scopoletin 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28255 and PS417_28260 are separated by 293 nucleotides PS417_28260 and PS417_28265 are separated by 125 nucleotides PS417_28265 and PS417_28270 are separated by 117 nucleotides PS417_28270 and PS417_28275 overlap by 7 nucleotides
PS417_28255: PS417_28255 - potassium transporter, at 6,102,500 to 6,104,263
_28255
PS417_28260: PS417_28260 - VdlD, at 6,104,557 to 6,105,033
_28260
PS417_28265: PS417_28265 - pyridoxamine kinase, at 6,105,159 to 6,106,031
_28265
PS417_28270: PS417_28270 - hypothetical protein, at 6,106,149 to 6,106,544
_28270
PS417_28275: PS417_28275 - cobalamin biosynthesis protein CobW, at 6,106,538 to 6,107,500
_28275
Position (kb)
6105
6106
6107 Strain fitness (log2 ratio)
-2
-1
0
1 at 6104.161 kb on - strand at 6104.161 kb on - strand at 6104.161 kb on - strand at 6104.161 kb on - strand at 6104.161 kb on - strand at 6104.161 kb on - strand at 6104.284 kb on + strand at 6104.359 kb on + strand at 6104.392 kb on - strand at 6104.425 kb on + strand at 6104.425 kb on + strand at 6104.425 kb on + strand at 6104.425 kb on + strand at 6104.426 kb on - strand at 6104.427 kb on + strand at 6104.428 kb on - strand at 6104.428 kb on - strand at 6104.428 kb on - strand at 6104.538 kb on + strand at 6104.539 kb on - strand at 6104.539 kb on - strand at 6104.556 kb on + strand at 6104.625 kb on + strand, within PS417_28260 at 6104.626 kb on - strand, within PS417_28260 at 6104.653 kb on + strand, within PS417_28260 at 6104.653 kb on + strand, within PS417_28260 at 6104.671 kb on + strand, within PS417_28260 at 6104.671 kb on + strand, within PS417_28260 at 6104.701 kb on + strand, within PS417_28260 at 6104.701 kb on + strand, within PS417_28260 at 6104.788 kb on + strand, within PS417_28260 at 6104.789 kb on - strand, within PS417_28260 at 6104.789 kb on - strand, within PS417_28260 at 6104.789 kb on - strand, within PS417_28260 at 6104.862 kb on + strand, within PS417_28260 at 6104.907 kb on + strand, within PS417_28260 at 6105.160 kb on + strand at 6105.160 kb on + strand at 6105.160 kb on + strand at 6105.160 kb on + strand at 6105.162 kb on + strand at 6105.222 kb on + strand at 6105.222 kb on + strand at 6105.701 kb on - strand, within PS417_28265 at 6105.701 kb on - strand, within PS417_28265 at 6106.075 kb on - strand at 6106.082 kb on + strand at 6106.313 kb on - strand, within PS417_28270 at 6106.313 kb on - strand, within PS417_28270 at 6106.360 kb on - strand, within PS417_28270 at 6106.501 kb on + strand, within PS417_28270 at 6106.944 kb on - strand, within PS417_28275 at 6106.966 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress remove 6,104,161 - +0.3 6,104,161 - -1.0 6,104,161 - -0.6 6,104,161 - -0.4 6,104,161 - -0.6 6,104,161 - +0.8 6,104,284 + +0.1 6,104,359 + +0.8 6,104,392 - +0.9 6,104,425 + -0.2 6,104,425 + -1.7 6,104,425 + -0.7 6,104,425 + +1.6 6,104,426 - +1.4 6,104,427 + -0.1 6,104,428 - -0.7 6,104,428 - -0.8 6,104,428 - -0.7 6,104,538 + +0.5 6,104,539 - +0.4 6,104,539 - -0.2 6,104,556 + -0.9 6,104,625 + PS417_28260 0.14 +0.7 6,104,626 - PS417_28260 0.14 +0.8 6,104,653 + PS417_28260 0.20 -0.5 6,104,653 + PS417_28260 0.20 -0.1 6,104,671 + PS417_28260 0.24 -1.8 6,104,671 + PS417_28260 0.24 +1.1 6,104,701 + PS417_28260 0.30 -0.2 6,104,701 + PS417_28260 0.30 +0.3 6,104,788 + PS417_28260 0.48 -0.2 6,104,789 - PS417_28260 0.49 -0.3 6,104,789 - PS417_28260 0.49 -0.3 6,104,789 - PS417_28260 0.49 -0.5 6,104,862 + PS417_28260 0.64 -0.3 6,104,907 + PS417_28260 0.73 -0.2 6,105,160 + -0.4 6,105,160 + -0.2 6,105,160 + -0.2 6,105,160 + -0.1 6,105,162 + +1.3 6,105,222 + +0.1 6,105,222 + -0.4 6,105,701 - PS417_28265 0.62 -0.3 6,105,701 - PS417_28265 0.62 -1.4 6,106,075 - -0.6 6,106,082 + +0.8 6,106,313 - PS417_28270 0.41 +0.1 6,106,313 - PS417_28270 0.41 -1.9 6,106,360 - PS417_28270 0.53 -0.7 6,106,501 + PS417_28270 0.89 +1.1 6,106,944 - PS417_28275 0.42 +0.1 6,106,966 - +0.2
Or see this region's nucleotide sequence