Strain Fitness in Pseudomonas simiae WCS417 around PS417_28020

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28010 and PS417_28015 are separated by 37 nucleotidesPS417_28015 and PS417_28020 are separated by 196 nucleotidesPS417_28020 and PS417_28025 overlap by 1 nucleotides PS417_28010: PS417_28010 - pyridine nucleotide-disulfide oxidoreductase, at 6,046,340 to 6,047,488 _28010 PS417_28015: PS417_28015 - rubredoxin, at 6,047,526 to 6,047,693 _28015 PS417_28020: PS417_28020 - chorismate--pyruvate lyase, at 6,047,890 to 6,048,453 _28020 PS417_28025: PS417_28025 - 4-hydroxybenzoate polyprenyltransferase, at 6,048,453 to 6,049,343 _28025 Position (kb) 6047 6048 6049Strain fitness (log2 ratio) -2 -1 0 1 2at 6047.092 kb on - strand, within PS417_28010at 6047.367 kb on + strand, within PS417_28010at 6047.445 kb on + strandat 6047.502 kb on + strandat 6047.503 kb on - strandat 6047.505 kb on + strandat 6047.505 kb on + strandat 6047.505 kb on + strandat 6047.505 kb on + strandat 6047.505 kb on + strandat 6047.506 kb on - strandat 6047.506 kb on - strandat 6047.506 kb on - strandat 6047.506 kb on - strandat 6047.509 kb on + strandat 6047.509 kb on + strandat 6047.509 kb on + strandat 6047.510 kb on - strandat 6047.656 kb on + strand, within PS417_28015at 6047.656 kb on + strand, within PS417_28015at 6047.657 kb on - strand, within PS417_28015at 6047.657 kb on - strand, within PS417_28015at 6047.657 kb on - strand, within PS417_28015at 6047.673 kb on + strand, within PS417_28015at 6047.673 kb on + strand, within PS417_28015at 6047.694 kb on + strandat 6047.694 kb on + strandat 6047.695 kb on - strandat 6047.699 kb on - strandat 6047.851 kb on + strandat 6047.852 kb on - strandat 6048.136 kb on + strand, within PS417_28020at 6048.136 kb on + strand, within PS417_28020at 6048.136 kb on + strandat 6048.137 kb on - strand, within PS417_28020at 6048.216 kb on + strand, within PS417_28020at 6048.216 kb on + strand, within PS417_28020at 6048.456 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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6,047,092 - PS417_28010 0.65 +0.8
6,047,367 + PS417_28010 0.89 -0.2
6,047,445 + +1.8
6,047,502 + -0.4
6,047,503 - -0.5
6,047,505 + -0.7
6,047,505 + -0.8
6,047,505 + -1.0
6,047,505 + -0.1
6,047,505 + -0.5
6,047,506 - +0.7
6,047,506 - -0.6
6,047,506 - -0.1
6,047,506 - -0.1
6,047,509 + +0.2
6,047,509 + -0.2
6,047,509 + -0.9
6,047,510 - +0.0
6,047,656 + PS417_28015 0.77 -0.0
6,047,656 + PS417_28015 0.77 -0.0
6,047,657 - PS417_28015 0.78 -0.2
6,047,657 - PS417_28015 0.78 -1.1
6,047,657 - PS417_28015 0.78 -0.2
6,047,673 + PS417_28015 0.88 -2.3
6,047,673 + PS417_28015 0.88 -0.9
6,047,694 + +0.3
6,047,694 + -0.4
6,047,695 - -0.5
6,047,699 - +0.9
6,047,851 + +0.2
6,047,852 - -0.2
6,048,136 + PS417_28020 0.44 -1.7
6,048,136 + PS417_28020 0.44 -0.2
6,048,136 + +1.1
6,048,137 - PS417_28020 0.44 +0.5
6,048,216 + PS417_28020 0.58 -0.7
6,048,216 + PS417_28020 0.58 -0.9
6,048,456 + -1.0

Or see this region's nucleotide sequence