Experiment: Scopoletin 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27695 and PS417_27700 are separated by 79 nucleotides PS417_27700 and PS417_27705 overlap by 29 nucleotides PS417_27705 and PS417_27710 are separated by 156 nucleotides PS417_27710 and PS417_27715 are separated by 22 nucleotides
PS417_27695: PS417_27695 - alanine racemase, at 5,974,279 to 5,975,352
_27695
PS417_27700: PS417_27700 - cytochrome C2, at 5,975,432 to 5,975,785
_27700
PS417_27705: PS417_27705 - amino acid dehydrogenase, at 5,975,757 to 5,977,058
_27705
PS417_27710: PS417_27710 - AsnC family transcriptional regulator, at 5,977,215 to 5,977,703
_27710
PS417_27715: PS417_27715 - Fe-S oxidoreductase, at 5,977,726 to 5,978,079
_27715
Position (kb)
5975
5976
5977
5978 Strain fitness (log2 ratio)
-1
0
1
2 at 5976.233 kb on - strand, within PS417_27705 at 5977.009 kb on + strand at 5977.099 kb on - strand at 5977.124 kb on - strand at 5977.295 kb on + strand, within PS417_27710 at 5977.438 kb on + strand, within PS417_27710 at 5977.439 kb on - strand, within PS417_27710 at 5977.554 kb on + strand, within PS417_27710 at 5977.650 kb on + strand, within PS417_27710 at 5977.650 kb on + strand, within PS417_27710 at 5977.651 kb on - strand, within PS417_27710 at 5977.651 kb on - strand, within PS417_27710 at 5977.651 kb on - strand, within PS417_27710 at 5977.652 kb on + strand, within PS417_27710 at 5977.719 kb on - strand at 5977.728 kb on - strand at 5977.728 kb on - strand at 5977.757 kb on + strand at 5977.758 kb on - strand at 5977.758 kb on - strand at 5977.758 kb on - strand at 5977.758 kb on - strand at 5977.758 kb on - strand at 5977.874 kb on + strand, within PS417_27715 at 5977.874 kb on + strand, within PS417_27715 at 5977.875 kb on - strand, within PS417_27715 at 5977.875 kb on - strand, within PS417_27715
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress remove 5,976,233 - PS417_27705 0.37 -1.4 5,977,009 + +0.1 5,977,099 - -0.2 5,977,124 - -1.3 5,977,295 + PS417_27710 0.16 +0.1 5,977,438 + PS417_27710 0.46 -1.5 5,977,439 - PS417_27710 0.46 -0.2 5,977,554 + PS417_27710 0.69 +0.2 5,977,650 + PS417_27710 0.89 -0.7 5,977,650 + PS417_27710 0.89 -1.0 5,977,651 - PS417_27710 0.89 -0.4 5,977,651 - PS417_27710 0.89 -1.6 5,977,651 - PS417_27710 0.89 -0.0 5,977,652 + PS417_27710 0.89 -0.4 5,977,719 - -1.5 5,977,728 - -0.5 5,977,728 - +0.1 5,977,757 + -0.3 5,977,758 - -0.5 5,977,758 - +0.8 5,977,758 - -0.5 5,977,758 - +0.2 5,977,758 - -0.6 5,977,874 + PS417_27715 0.42 +2.3 5,977,874 + PS417_27715 0.42 -0.8 5,977,875 - PS417_27715 0.42 -0.2 5,977,875 - PS417_27715 0.42 +0.6
Or see this region's nucleotide sequence