Strain Fitness in Pseudomonas simiae WCS417 around PS417_27705

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27695 and PS417_27700 are separated by 79 nucleotidesPS417_27700 and PS417_27705 overlap by 29 nucleotidesPS417_27705 and PS417_27710 are separated by 156 nucleotidesPS417_27710 and PS417_27715 are separated by 22 nucleotides PS417_27695: PS417_27695 - alanine racemase, at 5,974,279 to 5,975,352 _27695 PS417_27700: PS417_27700 - cytochrome C2, at 5,975,432 to 5,975,785 _27700 PS417_27705: PS417_27705 - amino acid dehydrogenase, at 5,975,757 to 5,977,058 _27705 PS417_27710: PS417_27710 - AsnC family transcriptional regulator, at 5,977,215 to 5,977,703 _27710 PS417_27715: PS417_27715 - Fe-S oxidoreductase, at 5,977,726 to 5,978,079 _27715 Position (kb) 5975 5976 5977 5978Strain fitness (log2 ratio) -1 0 1 2at 5976.233 kb on - strand, within PS417_27705at 5977.009 kb on + strandat 5977.099 kb on - strandat 5977.124 kb on - strandat 5977.295 kb on + strand, within PS417_27710at 5977.438 kb on + strand, within PS417_27710at 5977.439 kb on - strand, within PS417_27710at 5977.554 kb on + strand, within PS417_27710at 5977.650 kb on + strand, within PS417_27710at 5977.650 kb on + strand, within PS417_27710at 5977.651 kb on - strand, within PS417_27710at 5977.651 kb on - strand, within PS417_27710at 5977.651 kb on - strand, within PS417_27710at 5977.652 kb on + strand, within PS417_27710at 5977.719 kb on - strandat 5977.728 kb on - strandat 5977.728 kb on - strandat 5977.757 kb on + strandat 5977.758 kb on - strandat 5977.758 kb on - strandat 5977.758 kb on - strandat 5977.758 kb on - strandat 5977.758 kb on - strandat 5977.874 kb on + strand, within PS417_27715at 5977.874 kb on + strand, within PS417_27715at 5977.875 kb on - strand, within PS417_27715at 5977.875 kb on - strand, within PS417_27715

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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5,976,233 - PS417_27705 0.37 -1.4
5,977,009 + +0.1
5,977,099 - -0.2
5,977,124 - -1.3
5,977,295 + PS417_27710 0.16 +0.1
5,977,438 + PS417_27710 0.46 -1.5
5,977,439 - PS417_27710 0.46 -0.2
5,977,554 + PS417_27710 0.69 +0.2
5,977,650 + PS417_27710 0.89 -0.7
5,977,650 + PS417_27710 0.89 -1.0
5,977,651 - PS417_27710 0.89 -0.4
5,977,651 - PS417_27710 0.89 -1.6
5,977,651 - PS417_27710 0.89 -0.0
5,977,652 + PS417_27710 0.89 -0.4
5,977,719 - -1.5
5,977,728 - -0.5
5,977,728 - +0.1
5,977,757 + -0.3
5,977,758 - -0.5
5,977,758 - +0.8
5,977,758 - -0.5
5,977,758 - +0.2
5,977,758 - -0.6
5,977,874 + PS417_27715 0.42 +2.3
5,977,874 + PS417_27715 0.42 -0.8
5,977,875 - PS417_27715 0.42 -0.2
5,977,875 - PS417_27715 0.42 +0.6

Or see this region's nucleotide sequence