Experiment: Scopoletin 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27290 and PS417_27295 are separated by 138 nucleotides PS417_27295 and PS417_27300 overlap by 4 nucleotides PS417_27300 and PS417_27305 are separated by 265 nucleotides PS417_27305 and PS417_27315 are separated by 353 nucleotides PS417_27315 and PS417_27320 are separated by 69 nucleotides
PS417_27290: PS417_27290 - hypothetical protein, at 5,890,945 to 5,891,502
_27290
PS417_27295: PS417_27295 - hypothetical protein, at 5,891,641 to 5,891,850
_27295
PS417_27300: PS417_27300 - cell division protein ZapA, at 5,891,847 to 5,892,164
_27300
PS417_27305: PS417_27305 - 5-formyltetrahydrofolate cyclo-ligase, at 5,892,430 to 5,893,059
_27305
PS417_27315: PS417_27315 - hypothetical protein, at 5,893,413 to 5,893,862
_27315
PS417_27320: PS417_27320 - hemolysin secretion protein D, at 5,893,932 to 5,894,897
_27320
Position (kb)
5892
5893
5894 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5891.496 kb on + strand at 5891.497 kb on - strand at 5891.533 kb on + strand at 5891.549 kb on - strand at 5891.553 kb on + strand at 5891.554 kb on - strand at 5891.568 kb on + strand at 5891.569 kb on - strand at 5891.577 kb on + strand at 5891.687 kb on + strand, within PS417_27295 at 5891.709 kb on + strand, within PS417_27295 at 5891.729 kb on + strand, within PS417_27295 at 5891.729 kb on + strand, within PS417_27295 at 5891.732 kb on + strand, within PS417_27295 at 5891.732 kb on + strand, within PS417_27295 at 5892.051 kb on - strand, within PS417_27300 at 5892.179 kb on + strand at 5892.187 kb on - strand at 5892.245 kb on + strand at 5892.300 kb on - strand at 5892.345 kb on - strand at 5892.345 kb on - strand at 5892.416 kb on + strand at 5892.417 kb on + strand at 5892.579 kb on + strand, within PS417_27305 at 5892.580 kb on - strand, within PS417_27305 at 5892.589 kb on + strand, within PS417_27305 at 5892.589 kb on + strand, within PS417_27305 at 5892.590 kb on - strand, within PS417_27305 at 5892.593 kb on + strand, within PS417_27305 at 5892.661 kb on + strand, within PS417_27305 at 5892.662 kb on - strand, within PS417_27305 at 5892.662 kb on - strand, within PS417_27305 at 5892.662 kb on - strand, within PS417_27305 at 5892.872 kb on - strand, within PS417_27305 at 5892.889 kb on + strand, within PS417_27305 at 5893.012 kb on - strand at 5893.021 kb on + strand at 5893.021 kb on + strand at 5893.022 kb on - strand at 5893.134 kb on + strand at 5893.147 kb on + strand at 5893.198 kb on - strand at 5893.198 kb on - strand at 5893.198 kb on - strand at 5893.209 kb on - strand at 5893.209 kb on - strand at 5893.244 kb on - strand at 5893.244 kb on - strand at 5893.295 kb on + strand at 5893.560 kb on + strand, within PS417_27315 at 5893.657 kb on - strand, within PS417_27315
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress remove 5,891,496 + -0.0 5,891,497 - -0.6 5,891,533 + +1.6 5,891,549 - +1.4 5,891,553 + -0.2 5,891,554 - -0.1 5,891,568 + +0.0 5,891,569 - +2.4 5,891,577 + -0.2 5,891,687 + PS417_27295 0.22 -0.4 5,891,709 + PS417_27295 0.32 -2.3 5,891,729 + PS417_27295 0.42 -2.7 5,891,729 + PS417_27295 0.42 -0.4 5,891,732 + PS417_27295 0.43 -0.7 5,891,732 + PS417_27295 0.43 -0.0 5,892,051 - PS417_27300 0.64 -1.9 5,892,179 + +0.3 5,892,187 - -0.5 5,892,245 + -1.0 5,892,300 - -1.6 5,892,345 - -0.8 5,892,345 - +0.7 5,892,416 + -1.0 5,892,417 + -0.2 5,892,579 + PS417_27305 0.24 -0.6 5,892,580 - PS417_27305 0.24 -0.6 5,892,589 + PS417_27305 0.25 -0.2 5,892,589 + PS417_27305 0.25 -0.9 5,892,590 - PS417_27305 0.25 -2.0 5,892,593 + PS417_27305 0.26 -0.4 5,892,661 + PS417_27305 0.37 -0.6 5,892,662 - PS417_27305 0.37 -2.0 5,892,662 - PS417_27305 0.37 +1.5 5,892,662 - PS417_27305 0.37 -0.1 5,892,872 - PS417_27305 0.70 -0.6 5,892,889 + PS417_27305 0.73 +0.6 5,893,012 - -0.6 5,893,021 + +0.6 5,893,021 + +1.2 5,893,022 - -2.1 5,893,134 + -0.4 5,893,147 + -0.2 5,893,198 - -0.6 5,893,198 - -0.3 5,893,198 - +1.2 5,893,209 - +0.2 5,893,209 - +0.4 5,893,244 - +0.3 5,893,244 - -1.3 5,893,295 + -0.4 5,893,560 + PS417_27315 0.33 +1.6 5,893,657 - PS417_27315 0.54 -0.9
Or see this region's nucleotide sequence