Strain Fitness in Pseudomonas simiae WCS417 around PS417_27305

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27290 and PS417_27295 are separated by 138 nucleotidesPS417_27295 and PS417_27300 overlap by 4 nucleotidesPS417_27300 and PS417_27305 are separated by 265 nucleotidesPS417_27305 and PS417_27315 are separated by 353 nucleotidesPS417_27315 and PS417_27320 are separated by 69 nucleotides PS417_27290: PS417_27290 - hypothetical protein, at 5,890,945 to 5,891,502 _27290 PS417_27295: PS417_27295 - hypothetical protein, at 5,891,641 to 5,891,850 _27295 PS417_27300: PS417_27300 - cell division protein ZapA, at 5,891,847 to 5,892,164 _27300 PS417_27305: PS417_27305 - 5-formyltetrahydrofolate cyclo-ligase, at 5,892,430 to 5,893,059 _27305 PS417_27315: PS417_27315 - hypothetical protein, at 5,893,413 to 5,893,862 _27315 PS417_27320: PS417_27320 - hemolysin secretion protein D, at 5,893,932 to 5,894,897 _27320 Position (kb) 5892 5893 5894Strain fitness (log2 ratio) -2 -1 0 1 2at 5891.496 kb on + strandat 5891.497 kb on - strandat 5891.533 kb on + strandat 5891.549 kb on - strandat 5891.553 kb on + strandat 5891.554 kb on - strandat 5891.568 kb on + strandat 5891.569 kb on - strandat 5891.577 kb on + strandat 5891.687 kb on + strand, within PS417_27295at 5891.709 kb on + strand, within PS417_27295at 5891.729 kb on + strand, within PS417_27295at 5891.729 kb on + strand, within PS417_27295at 5891.732 kb on + strand, within PS417_27295at 5891.732 kb on + strand, within PS417_27295at 5892.051 kb on - strand, within PS417_27300at 5892.179 kb on + strandat 5892.187 kb on - strandat 5892.245 kb on + strandat 5892.300 kb on - strandat 5892.345 kb on - strandat 5892.345 kb on - strandat 5892.416 kb on + strandat 5892.417 kb on + strandat 5892.579 kb on + strand, within PS417_27305at 5892.580 kb on - strand, within PS417_27305at 5892.589 kb on + strand, within PS417_27305at 5892.589 kb on + strand, within PS417_27305at 5892.590 kb on - strand, within PS417_27305at 5892.593 kb on + strand, within PS417_27305at 5892.661 kb on + strand, within PS417_27305at 5892.662 kb on - strand, within PS417_27305at 5892.662 kb on - strand, within PS417_27305at 5892.662 kb on - strand, within PS417_27305at 5892.872 kb on - strand, within PS417_27305at 5892.889 kb on + strand, within PS417_27305at 5893.012 kb on - strandat 5893.021 kb on + strandat 5893.021 kb on + strandat 5893.022 kb on - strandat 5893.134 kb on + strandat 5893.147 kb on + strandat 5893.198 kb on - strandat 5893.198 kb on - strandat 5893.198 kb on - strandat 5893.209 kb on - strandat 5893.209 kb on - strandat 5893.244 kb on - strandat 5893.244 kb on - strandat 5893.295 kb on + strandat 5893.560 kb on + strand, within PS417_27315at 5893.657 kb on - strand, within PS417_27315

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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5,891,496 + -0.0
5,891,497 - -0.6
5,891,533 + +1.6
5,891,549 - +1.4
5,891,553 + -0.2
5,891,554 - -0.1
5,891,568 + +0.0
5,891,569 - +2.4
5,891,577 + -0.2
5,891,687 + PS417_27295 0.22 -0.4
5,891,709 + PS417_27295 0.32 -2.3
5,891,729 + PS417_27295 0.42 -2.7
5,891,729 + PS417_27295 0.42 -0.4
5,891,732 + PS417_27295 0.43 -0.7
5,891,732 + PS417_27295 0.43 -0.0
5,892,051 - PS417_27300 0.64 -1.9
5,892,179 + +0.3
5,892,187 - -0.5
5,892,245 + -1.0
5,892,300 - -1.6
5,892,345 - -0.8
5,892,345 - +0.7
5,892,416 + -1.0
5,892,417 + -0.2
5,892,579 + PS417_27305 0.24 -0.6
5,892,580 - PS417_27305 0.24 -0.6
5,892,589 + PS417_27305 0.25 -0.2
5,892,589 + PS417_27305 0.25 -0.9
5,892,590 - PS417_27305 0.25 -2.0
5,892,593 + PS417_27305 0.26 -0.4
5,892,661 + PS417_27305 0.37 -0.6
5,892,662 - PS417_27305 0.37 -2.0
5,892,662 - PS417_27305 0.37 +1.5
5,892,662 - PS417_27305 0.37 -0.1
5,892,872 - PS417_27305 0.70 -0.6
5,892,889 + PS417_27305 0.73 +0.6
5,893,012 - -0.6
5,893,021 + +0.6
5,893,021 + +1.2
5,893,022 - -2.1
5,893,134 + -0.4
5,893,147 + -0.2
5,893,198 - -0.6
5,893,198 - -0.3
5,893,198 - +1.2
5,893,209 - +0.2
5,893,209 - +0.4
5,893,244 - +0.3
5,893,244 - -1.3
5,893,295 + -0.4
5,893,560 + PS417_27315 0.33 +1.6
5,893,657 - PS417_27315 0.54 -0.9

Or see this region's nucleotide sequence