Strain Fitness in Pseudomonas simiae WCS417 around PS417_26805

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26800 and PS417_26805 overlap by 4 nucleotidesPS417_26805 and PS417_26810 overlap by 4 nucleotides PS417_26800: PS417_26800 - cell division protein FtsX, at 5,786,781 to 5,787,806 _26800 PS417_26805: PS417_26805 - cell division protein FtsE, at 5,787,803 to 5,788,474 _26805 PS417_26810: PS417_26810 - cell division protein FtsY, at 5,788,471 to 5,789,856 _26810 Position (kb) 5787 5788 5789Strain fitness (log2 ratio) -1 0 1 2at 5786.803 kb on - strandat 5786.803 kb on - strandat 5786.837 kb on - strandat 5786.837 kb on - strandat 5787.005 kb on - strand, within PS417_26800at 5787.020 kb on - strand, within PS417_26800at 5787.040 kb on + strand, within PS417_26800at 5787.040 kb on + strand, within PS417_26800at 5787.041 kb on - strand, within PS417_26800at 5787.041 kb on - strand, within PS417_26800at 5787.041 kb on - strand, within PS417_26800at 5787.041 kb on - strand, within PS417_26800at 5787.041 kb on - strand, within PS417_26800at 5787.041 kb on - strand, within PS417_26800at 5787.075 kb on + strand, within PS417_26800at 5787.076 kb on - strand, within PS417_26800at 5787.116 kb on + strand, within PS417_26800at 5787.116 kb on + strand, within PS417_26800at 5787.116 kb on + strand, within PS417_26800at 5787.117 kb on - strand, within PS417_26800at 5787.117 kb on - strand, within PS417_26800at 5787.120 kb on + strand, within PS417_26800at 5787.132 kb on + strand, within PS417_26800at 5787.208 kb on - strand, within PS417_26800at 5787.216 kb on + strand, within PS417_26800at 5787.216 kb on + strand, within PS417_26800at 5787.217 kb on - strand, within PS417_26800at 5787.217 kb on - strand, within PS417_26800at 5787.217 kb on - strand, within PS417_26800at 5787.217 kb on - strand, within PS417_26800at 5787.409 kb on + strand, within PS417_26800at 5787.409 kb on + strand, within PS417_26800at 5787.410 kb on - strand, within PS417_26800at 5787.494 kb on - strand, within PS417_26800at 5787.546 kb on - strand, within PS417_26800at 5787.785 kb on + strandat 5787.806 kb on + strandat 5788.376 kb on + strand, within PS417_26805at 5788.444 kb on - strandat 5788.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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5,786,803 - -1.7
5,786,803 - -0.2
5,786,837 - +0.5
5,786,837 - +0.4
5,787,005 - PS417_26800 0.22 -0.7
5,787,020 - PS417_26800 0.23 -0.9
5,787,040 + PS417_26800 0.25 +0.8
5,787,040 + PS417_26800 0.25 -0.1
5,787,041 - PS417_26800 0.25 -0.5
5,787,041 - PS417_26800 0.25 +0.4
5,787,041 - PS417_26800 0.25 +0.7
5,787,041 - PS417_26800 0.25 -0.8
5,787,041 - PS417_26800 0.25 -1.0
5,787,041 - PS417_26800 0.25 -0.2
5,787,075 + PS417_26800 0.29 +0.6
5,787,076 - PS417_26800 0.29 +0.6
5,787,116 + PS417_26800 0.33 +0.4
5,787,116 + PS417_26800 0.33 -0.1
5,787,116 + PS417_26800 0.33 +0.7
5,787,117 - PS417_26800 0.33 +0.0
5,787,117 - PS417_26800 0.33 -0.9
5,787,120 + PS417_26800 0.33 -0.2
5,787,132 + PS417_26800 0.34 -1.0
5,787,208 - PS417_26800 0.42 -0.7
5,787,216 + PS417_26800 0.42 +0.3
5,787,216 + PS417_26800 0.42 -0.4
5,787,217 - PS417_26800 0.42 -0.2
5,787,217 - PS417_26800 0.42 -1.6
5,787,217 - PS417_26800 0.42 +0.9
5,787,217 - PS417_26800 0.42 -1.2
5,787,409 + PS417_26800 0.61 +0.2
5,787,409 + PS417_26800 0.61 +0.2
5,787,410 - PS417_26800 0.61 -0.1
5,787,494 - PS417_26800 0.69 +0.7
5,787,546 - PS417_26800 0.75 +1.1
5,787,785 + -0.7
5,787,806 + +2.3
5,788,376 + PS417_26805 0.85 -0.9
5,788,444 - -0.5
5,788,444 - -1.3

Or see this region's nucleotide sequence