Strain Fitness in Pseudomonas simiae WCS417 around PS417_22935

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22930 and PS417_22935 are separated by 12 nucleotidesPS417_22935 and PS417_22940 are separated by 355 nucleotides PS417_22930: PS417_22930 - cytochrome C assembly protein, at 4,967,482 to 4,968,294 _22930 PS417_22935: PS417_22935 - hypothetical protein, at 4,968,307 to 4,969,545 _22935 PS417_22940: PS417_22940 - MFS transporter, at 4,969,901 to 4,971,214 _22940 Position (kb) 4968 4969 4970Strain fitness (log2 ratio) -2 -1 0 1at 4968.610 kb on + strand, within PS417_22935at 4968.610 kb on + strand, within PS417_22935at 4969.105 kb on + strand, within PS417_22935at 4969.106 kb on - strand, within PS417_22935at 4969.106 kb on - strand, within PS417_22935at 4969.309 kb on + strand, within PS417_22935at 4969.642 kb on + strandat 4969.642 kb on + strandat 4969.642 kb on + strandat 4969.643 kb on - strandat 4969.643 kb on - strandat 4969.643 kb on - strandat 4969.643 kb on - strandat 4969.643 kb on - strandat 4969.643 kb on - strandat 4969.643 kb on - strandat 4969.643 kb on - strandat 4969.643 kb on - strandat 4969.662 kb on - strandat 4969.662 kb on - strandat 4969.690 kb on + strandat 4969.690 kb on + strandat 4969.690 kb on + strandat 4969.690 kb on + strandat 4969.691 kb on - strandat 4969.691 kb on - strandat 4969.691 kb on - strandat 4969.691 kb on - strandat 4969.691 kb on - strandat 4969.708 kb on + strandat 4969.708 kb on + strandat 4969.709 kb on - strandat 4969.709 kb on - strandat 4969.709 kb on - strandat 4969.711 kb on - strandat 4969.859 kb on + strandat 4969.859 kb on + strandat 4969.898 kb on - strandat 4969.913 kb on + strandat 4969.913 kb on + strandat 4969.914 kb on - strandat 4969.914 kb on - strandat 4970.001 kb on - strandat 4970.009 kb on + strandat 4970.009 kb on + strandat 4970.009 kb on + strandat 4970.010 kb on - strandat 4970.010 kb on - strandat 4970.010 kb on - strandat 4970.010 kb on - strandat 4970.011 kb on + strandat 4970.011 kb on + strandat 4970.012 kb on - strandat 4970.012 kb on - strandat 4970.016 kb on - strandat 4970.215 kb on + strand, within PS417_22940

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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4,968,610 + PS417_22935 0.24 -0.2
4,968,610 + PS417_22935 0.24 -0.2
4,969,105 + PS417_22935 0.64 -1.6
4,969,106 - PS417_22935 0.64 -0.1
4,969,106 - PS417_22935 0.64 +0.2
4,969,309 + PS417_22935 0.81 -1.4
4,969,642 + -0.4
4,969,642 + +0.4
4,969,642 + -0.7
4,969,643 - +0.5
4,969,643 - -0.4
4,969,643 - +0.8
4,969,643 - -0.7
4,969,643 - +1.4
4,969,643 - -0.3
4,969,643 - +0.7
4,969,643 - +0.7
4,969,643 - -0.5
4,969,662 - -0.3
4,969,662 - +1.0
4,969,690 + +0.4
4,969,690 + -0.8
4,969,690 + -0.4
4,969,690 + -0.0
4,969,691 - -1.4
4,969,691 - +0.2
4,969,691 - -0.3
4,969,691 - +0.4
4,969,691 - -0.0
4,969,708 + -0.4
4,969,708 + +0.1
4,969,709 - -0.7
4,969,709 - +0.9
4,969,709 - +0.4
4,969,711 - -0.5
4,969,859 + +0.8
4,969,859 + -2.1
4,969,898 - -1.3
4,969,913 + -0.6
4,969,913 + +0.0
4,969,914 - -0.2
4,969,914 - -1.3
4,970,001 - +1.4
4,970,009 + -1.3
4,970,009 + +0.9
4,970,009 + -0.2
4,970,010 - -1.5
4,970,010 - +0.4
4,970,010 - -1.2
4,970,010 - -1.0
4,970,011 + +0.7
4,970,011 + +1.1
4,970,012 - -0.1
4,970,012 - -0.2
4,970,016 - -0.1
4,970,215 + PS417_22940 0.24 -0.3

Or see this region's nucleotide sequence