Strain Fitness in Pseudomonas simiae WCS417 around PS417_22720

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22710 and PS417_22715 are separated by 148 nucleotidesPS417_22715 and PS417_22720 are separated by 162 nucleotidesPS417_22720 and PS417_22725 are separated by 139 nucleotides PS417_22710: PS417_22710 - TonB-dependent receptor, at 4,918,205 to 4,920,769 _22710 PS417_22715: PS417_22715 - heme oxygenase, at 4,920,918 to 4,921,526 _22715 PS417_22720: PS417_22720 - membrane protein, at 4,921,689 to 4,922,090 _22720 PS417_22725: PS417_22725 - chemotaxis protein, at 4,922,230 to 4,924,368 _22725 Position (kb) 4921 4922 4923Strain fitness (log2 ratio) -1 0 1 2at 4920.952 kb on + strandat 4920.978 kb on - strandat 4921.072 kb on - strandat 4921.072 kb on - strand, within PS417_22715at 4921.313 kb on - strand, within PS417_22715at 4921.484 kb on - strandat 4921.584 kb on + strandat 4921.599 kb on - strandat 4921.644 kb on + strandat 4921.749 kb on + strand, within PS417_22720at 4921.749 kb on + strand, within PS417_22720at 4921.749 kb on + strand, within PS417_22720at 4921.750 kb on - strand, within PS417_22720at 4921.750 kb on - strand, within PS417_22720at 4922.086 kb on + strandat 4922.087 kb on - strandat 4922.087 kb on - strandat 4922.087 kb on - strandat 4922.087 kb on - strandat 4922.101 kb on - strandat 4922.101 kb on - strandat 4922.101 kb on - strandat 4922.108 kb on - strandat 4922.168 kb on - strandat 4922.168 kb on - strandat 4922.193 kb on + strandat 4922.193 kb on + strandat 4922.194 kb on - strandat 4922.194 kb on - strandat 4922.194 kb on - strandat 4922.229 kb on + strandat 4922.229 kb on + strandat 4922.229 kb on + strandat 4922.229 kb on + strandat 4922.230 kb on - strandat 4922.698 kb on + strand, within PS417_22725at 4922.699 kb on - strand, within PS417_22725at 4922.837 kb on + strand, within PS417_22725at 4922.838 kb on - strand, within PS417_22725

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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4,920,952 + +0.2
4,920,978 - -0.7
4,921,072 - +1.4
4,921,072 - PS417_22715 0.25 -0.0
4,921,313 - PS417_22715 0.65 +0.2
4,921,484 - -0.8
4,921,584 + +2.4
4,921,599 - -0.0
4,921,644 + +0.0
4,921,749 + PS417_22720 0.15 -0.2
4,921,749 + PS417_22720 0.15 +1.0
4,921,749 + PS417_22720 0.15 +0.6
4,921,750 - PS417_22720 0.15 +0.0
4,921,750 - PS417_22720 0.15 +0.9
4,922,086 + +0.3
4,922,087 - -1.4
4,922,087 - +1.4
4,922,087 - +0.2
4,922,087 - +0.1
4,922,101 - -0.8
4,922,101 - +1.8
4,922,101 - -0.2
4,922,108 - +1.8
4,922,168 - -0.5
4,922,168 - -0.4
4,922,193 + +1.2
4,922,193 + -1.3
4,922,194 - +1.0
4,922,194 - -0.2
4,922,194 - +0.6
4,922,229 + +2.0
4,922,229 + -0.5
4,922,229 + -0.4
4,922,229 + +1.0
4,922,230 - +0.7
4,922,698 + PS417_22725 0.22 +0.4
4,922,699 - PS417_22725 0.22 +1.3
4,922,837 + PS417_22725 0.28 -0.0
4,922,838 - PS417_22725 0.28 +0.1

Or see this region's nucleotide sequence