Strain Fitness in Pseudomonas simiae WCS417 around PS417_22530

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22520 and PS417_22525 are separated by 2 nucleotidesPS417_22525 and PS417_22530 are separated by 125 nucleotidesPS417_22530 and PS417_22535 are separated by 13 nucleotides PS417_22520: PS417_22520 - histidine kinase, at 4,873,927 to 4,875,963 _22520 PS417_22525: PS417_22525 - ATP--cobalamin adenosyltransferase, at 4,875,966 to 4,876,544 _22525 PS417_22530: PS417_22530 - hypothetical protein, at 4,876,670 to 4,877,614 _22530 PS417_22535: PS417_22535 - ornithine acetyltransferase, at 4,877,628 to 4,878,845 _22535 Position (kb) 4876 4877 4878Strain fitness (log2 ratio) -2 -1 0 1 2at 4875.990 kb on + strandat 4875.990 kb on + strandat 4875.990 kb on + strandat 4875.990 kb on + strandat 4875.990 kb on + strandat 4875.990 kb on + strandat 4875.991 kb on - strandat 4875.991 kb on - strandat 4875.991 kb on - strandat 4875.991 kb on - strandat 4875.992 kb on + strandat 4875.992 kb on + strandat 4876.086 kb on - strand, within PS417_22525at 4876.109 kb on - strand, within PS417_22525at 4876.155 kb on - strand, within PS417_22525at 4876.155 kb on - strand, within PS417_22525at 4876.357 kb on + strand, within PS417_22525at 4876.357 kb on + strand, within PS417_22525at 4876.358 kb on - strand, within PS417_22525at 4876.358 kb on - strand, within PS417_22525at 4876.440 kb on + strand, within PS417_22525at 4876.440 kb on + strand, within PS417_22525at 4876.441 kb on - strand, within PS417_22525at 4876.543 kb on - strandat 4876.975 kb on + strand, within PS417_22530at 4876.975 kb on + strand, within PS417_22530at 4877.277 kb on + strand, within PS417_22530at 4877.277 kb on + strand, within PS417_22530at 4877.277 kb on + strand, within PS417_22530at 4877.278 kb on - strand, within PS417_22530at 4877.597 kb on + strandat 4877.598 kb on - strandat 4877.598 kb on - strandat 4877.598 kb on - strandat 4877.629 kb on + strandat 4877.630 kb on - strandat 4877.630 kb on - strandat 4877.660 kb on - strandat 4877.774 kb on - strand, within PS417_22535at 4877.947 kb on + strand, within PS417_22535at 4877.952 kb on + strand, within PS417_22535at 4877.952 kb on + strand, within PS417_22535at 4877.952 kb on + strand, within PS417_22535at 4877.952 kb on + strand, within PS417_22535at 4877.953 kb on - strand, within PS417_22535at 4877.953 kb on - strand, within PS417_22535at 4878.268 kb on + strand, within PS417_22535at 4878.508 kb on + strand, within PS417_22535

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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4,875,990 + -1.6
4,875,990 + -1.2
4,875,990 + +0.1
4,875,990 + +1.4
4,875,990 + -0.5
4,875,990 + +1.0
4,875,991 - -0.4
4,875,991 - +0.7
4,875,991 - -0.0
4,875,991 - -0.8
4,875,992 + +0.8
4,875,992 + -0.8
4,876,086 - PS417_22525 0.21 +0.3
4,876,109 - PS417_22525 0.25 -0.7
4,876,155 - PS417_22525 0.33 -0.4
4,876,155 - PS417_22525 0.33 +0.3
4,876,357 + PS417_22525 0.68 +0.5
4,876,357 + PS417_22525 0.68 +0.4
4,876,358 - PS417_22525 0.68 -0.5
4,876,358 - PS417_22525 0.68 -0.1
4,876,440 + PS417_22525 0.82 +0.6
4,876,440 + PS417_22525 0.82 -0.1
4,876,441 - PS417_22525 0.82 +0.0
4,876,543 - -0.4
4,876,975 + PS417_22530 0.32 -2.0
4,876,975 + PS417_22530 0.32 -2.0
4,877,277 + PS417_22530 0.64 +0.0
4,877,277 + PS417_22530 0.64 -0.4
4,877,277 + PS417_22530 0.64 -0.8
4,877,278 - PS417_22530 0.64 -1.1
4,877,597 + +0.2
4,877,598 - +0.1
4,877,598 - -0.4
4,877,598 - +1.5
4,877,629 + +0.0
4,877,630 - -1.8
4,877,630 - +1.9
4,877,660 - +0.1
4,877,774 - PS417_22535 0.12 -0.6
4,877,947 + PS417_22535 0.26 +0.1
4,877,952 + PS417_22535 0.27 -0.2
4,877,952 + PS417_22535 0.27 -0.7
4,877,952 + PS417_22535 0.27 -0.1
4,877,952 + PS417_22535 0.27 -1.3
4,877,953 - PS417_22535 0.27 -0.8
4,877,953 - PS417_22535 0.27 -0.1
4,878,268 + PS417_22535 0.53 -0.1
4,878,508 + PS417_22535 0.72 -1.2

Or see this region's nucleotide sequence