Experiment: Scopoletin 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22520 and PS417_22525 are separated by 2 nucleotides PS417_22525 and PS417_22530 are separated by 125 nucleotides PS417_22530 and PS417_22535 are separated by 13 nucleotides
PS417_22520: PS417_22520 - histidine kinase, at 4,873,927 to 4,875,963
_22520
PS417_22525: PS417_22525 - ATP--cobalamin adenosyltransferase, at 4,875,966 to 4,876,544
_22525
PS417_22530: PS417_22530 - hypothetical protein, at 4,876,670 to 4,877,614
_22530
PS417_22535: PS417_22535 - ornithine acetyltransferase, at 4,877,628 to 4,878,845
_22535
Position (kb)
4876
4877
4878 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4875.990 kb on + strand at 4875.990 kb on + strand at 4875.990 kb on + strand at 4875.990 kb on + strand at 4875.990 kb on + strand at 4875.990 kb on + strand at 4875.991 kb on - strand at 4875.991 kb on - strand at 4875.991 kb on - strand at 4875.991 kb on - strand at 4875.992 kb on + strand at 4875.992 kb on + strand at 4876.086 kb on - strand, within PS417_22525 at 4876.109 kb on - strand, within PS417_22525 at 4876.155 kb on - strand, within PS417_22525 at 4876.155 kb on - strand, within PS417_22525 at 4876.357 kb on + strand, within PS417_22525 at 4876.357 kb on + strand, within PS417_22525 at 4876.358 kb on - strand, within PS417_22525 at 4876.358 kb on - strand, within PS417_22525 at 4876.440 kb on + strand, within PS417_22525 at 4876.440 kb on + strand, within PS417_22525 at 4876.441 kb on - strand, within PS417_22525 at 4876.543 kb on - strand at 4876.975 kb on + strand, within PS417_22530 at 4876.975 kb on + strand, within PS417_22530 at 4877.277 kb on + strand, within PS417_22530 at 4877.277 kb on + strand, within PS417_22530 at 4877.277 kb on + strand, within PS417_22530 at 4877.278 kb on - strand, within PS417_22530 at 4877.597 kb on + strand at 4877.598 kb on - strand at 4877.598 kb on - strand at 4877.598 kb on - strand at 4877.629 kb on + strand at 4877.630 kb on - strand at 4877.630 kb on - strand at 4877.660 kb on - strand at 4877.774 kb on - strand, within PS417_22535 at 4877.947 kb on + strand, within PS417_22535 at 4877.952 kb on + strand, within PS417_22535 at 4877.952 kb on + strand, within PS417_22535 at 4877.952 kb on + strand, within PS417_22535 at 4877.952 kb on + strand, within PS417_22535 at 4877.953 kb on - strand, within PS417_22535 at 4877.953 kb on - strand, within PS417_22535 at 4878.268 kb on + strand, within PS417_22535 at 4878.508 kb on + strand, within PS417_22535
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress remove 4,875,990 + -1.6 4,875,990 + -1.2 4,875,990 + +0.1 4,875,990 + +1.4 4,875,990 + -0.5 4,875,990 + +1.0 4,875,991 - -0.4 4,875,991 - +0.7 4,875,991 - -0.0 4,875,991 - -0.8 4,875,992 + +0.8 4,875,992 + -0.8 4,876,086 - PS417_22525 0.21 +0.3 4,876,109 - PS417_22525 0.25 -0.7 4,876,155 - PS417_22525 0.33 -0.4 4,876,155 - PS417_22525 0.33 +0.3 4,876,357 + PS417_22525 0.68 +0.5 4,876,357 + PS417_22525 0.68 +0.4 4,876,358 - PS417_22525 0.68 -0.5 4,876,358 - PS417_22525 0.68 -0.1 4,876,440 + PS417_22525 0.82 +0.6 4,876,440 + PS417_22525 0.82 -0.1 4,876,441 - PS417_22525 0.82 +0.0 4,876,543 - -0.4 4,876,975 + PS417_22530 0.32 -2.0 4,876,975 + PS417_22530 0.32 -2.0 4,877,277 + PS417_22530 0.64 +0.0 4,877,277 + PS417_22530 0.64 -0.4 4,877,277 + PS417_22530 0.64 -0.8 4,877,278 - PS417_22530 0.64 -1.1 4,877,597 + +0.2 4,877,598 - +0.1 4,877,598 - -0.4 4,877,598 - +1.5 4,877,629 + +0.0 4,877,630 - -1.8 4,877,630 - +1.9 4,877,660 - +0.1 4,877,774 - PS417_22535 0.12 -0.6 4,877,947 + PS417_22535 0.26 +0.1 4,877,952 + PS417_22535 0.27 -0.2 4,877,952 + PS417_22535 0.27 -0.7 4,877,952 + PS417_22535 0.27 -0.1 4,877,952 + PS417_22535 0.27 -1.3 4,877,953 - PS417_22535 0.27 -0.8 4,877,953 - PS417_22535 0.27 -0.1 4,878,268 + PS417_22535 0.53 -0.1 4,878,508 + PS417_22535 0.72 -1.2
Or see this region's nucleotide sequence