Experiment: Scopoletin 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21635 and PS417_21640 are separated by 72 nucleotides PS417_21640 and PS417_21645 are separated by 108 nucleotides PS417_21645 and PS417_21650 are separated by 62 nucleotides PS417_21650 and PS417_21655 are separated by 174 nucleotides PS417_21655 and PS417_21660 are separated by 95 nucleotides
PS417_21635: PS417_21635 - tRNA-Arg, at 4,694,201 to 4,694,277
_21635
PS417_21640: PS417_21640 - tRNA-Arg, at 4,694,350 to 4,694,426
_21640
PS417_21645: PS417_21645 - tRNA-Ser, at 4,694,535 to 4,694,625
_21645
PS417_21650: PS417_21650 - carbon storage regulator, at 4,694,688 to 4,694,876
_21650
PS417_21655: PS417_21655 - aspartate kinase, at 4,695,051 to 4,696,292
_21655
PS417_21660: PS417_21660 - alanyl-tRNA synthetase, at 4,696,388 to 4,699,006
_21660
Position (kb)
4695
4696
4697 Strain fitness (log2 ratio)
-1
0
1
2 at 4694.084 kb on + strand at 4694.084 kb on + strand at 4694.084 kb on + strand at 4694.200 kb on - strand at 4694.200 kb on - strand at 4694.200 kb on - strand at 4694.252 kb on - strand, within PS417_21635 at 4694.877 kb on - strand at 4694.939 kb on - strand at 4694.955 kb on - strand at 4694.967 kb on + strand at 4694.967 kb on + strand at 4694.967 kb on + strand at 4694.968 kb on - strand at 4694.968 kb on - strand at 4694.972 kb on - strand at 4695.564 kb on - strand, within PS417_21655 at 4695.567 kb on - strand, within PS417_21655 at 4696.326 kb on - strand at 4696.329 kb on - strand at 4696.363 kb on - strand at 4696.390 kb on - strand at 4696.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress remove 4,694,084 + +0.4 4,694,084 + -1.2 4,694,084 + +0.7 4,694,200 - -0.0 4,694,200 - -0.9 4,694,200 - +0.5 4,694,252 - PS417_21635 0.66 -0.3 4,694,877 - +0.4 4,694,939 - -0.1 4,694,955 - -0.5 4,694,967 + +2.1 4,694,967 + +0.6 4,694,967 + +1.7 4,694,968 - +1.3 4,694,968 - -0.8 4,694,972 - -0.7 4,695,564 - PS417_21655 0.41 -1.0 4,695,567 - PS417_21655 0.42 +0.9 4,696,326 - -0.0 4,696,329 - -0.1 4,696,363 - -0.6 4,696,390 - -0.1 4,696,394 - -0.9
Or see this region's nucleotide sequence