Strain Fitness in Pseudomonas simiae WCS417 around PS417_21655

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21635 and PS417_21640 are separated by 72 nucleotidesPS417_21640 and PS417_21645 are separated by 108 nucleotidesPS417_21645 and PS417_21650 are separated by 62 nucleotidesPS417_21650 and PS417_21655 are separated by 174 nucleotidesPS417_21655 and PS417_21660 are separated by 95 nucleotides PS417_21635: PS417_21635 - tRNA-Arg, at 4,694,201 to 4,694,277 _21635 PS417_21640: PS417_21640 - tRNA-Arg, at 4,694,350 to 4,694,426 _21640 PS417_21645: PS417_21645 - tRNA-Ser, at 4,694,535 to 4,694,625 _21645 PS417_21650: PS417_21650 - carbon storage regulator, at 4,694,688 to 4,694,876 _21650 PS417_21655: PS417_21655 - aspartate kinase, at 4,695,051 to 4,696,292 _21655 PS417_21660: PS417_21660 - alanyl-tRNA synthetase, at 4,696,388 to 4,699,006 _21660 Position (kb) 4695 4696 4697Strain fitness (log2 ratio) -1 0 1 2at 4694.084 kb on + strandat 4694.084 kb on + strandat 4694.084 kb on + strandat 4694.200 kb on - strandat 4694.200 kb on - strandat 4694.200 kb on - strandat 4694.252 kb on - strand, within PS417_21635at 4694.877 kb on - strandat 4694.939 kb on - strandat 4694.955 kb on - strandat 4694.967 kb on + strandat 4694.967 kb on + strandat 4694.967 kb on + strandat 4694.968 kb on - strandat 4694.968 kb on - strandat 4694.972 kb on - strandat 4695.564 kb on - strand, within PS417_21655at 4695.567 kb on - strand, within PS417_21655at 4696.326 kb on - strandat 4696.329 kb on - strandat 4696.363 kb on - strandat 4696.390 kb on - strandat 4696.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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4,694,084 + +0.4
4,694,084 + -1.2
4,694,084 + +0.7
4,694,200 - -0.0
4,694,200 - -0.9
4,694,200 - +0.5
4,694,252 - PS417_21635 0.66 -0.3
4,694,877 - +0.4
4,694,939 - -0.1
4,694,955 - -0.5
4,694,967 + +2.1
4,694,967 + +0.6
4,694,967 + +1.7
4,694,968 - +1.3
4,694,968 - -0.8
4,694,972 - -0.7
4,695,564 - PS417_21655 0.41 -1.0
4,695,567 - PS417_21655 0.42 +0.9
4,696,326 - -0.0
4,696,329 - -0.1
4,696,363 - -0.6
4,696,390 - -0.1
4,696,394 - -0.9

Or see this region's nucleotide sequence