Strain Fitness in Pseudomonas simiae WCS417 around PS417_18545

Experiment: Scopoletin 3 mM; liquid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_18535 and PS417_18540 are separated by 41 nucleotidesPS417_18540 and PS417_18545 are separated by 257 nucleotidesPS417_18545 and PS417_18550 overlap by 17 nucleotides PS417_18535: PS417_18535 - amidophosphoribosyltransferase, at 4,024,427 to 4,025,932 _18535 PS417_18540: PS417_18540 - colicin V production CvpA, at 4,025,974 to 4,026,531 _18540 PS417_18545: PS417_18545 - cell division protein, at 4,026,789 to 4,027,451 _18545 PS417_18550: PS417_18550 - folylpolyglutamate synthase, at 4,027,435 to 4,028,742 _18550 Position (kb) 4026 4027 4028Strain fitness (log2 ratio) -2 -1 0 1at 4025.976 kb on - strandat 4026.101 kb on - strand, within PS417_18540at 4026.259 kb on + strand, within PS417_18540at 4026.260 kb on - strand, within PS417_18540at 4026.279 kb on - strand, within PS417_18540at 4026.363 kb on - strand, within PS417_18540at 4026.523 kb on - strandat 4026.684 kb on + strandat 4026.931 kb on + strand, within PS417_18545at 4026.938 kb on + strand, within PS417_18545at 4027.430 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
remove
4,025,976 - -0.5
4,026,101 - PS417_18540 0.23 -0.4
4,026,259 + PS417_18540 0.51 +0.3
4,026,260 - PS417_18540 0.51 -1.0
4,026,279 - PS417_18540 0.55 +0.2
4,026,363 - PS417_18540 0.70 -0.3
4,026,523 - +1.4
4,026,684 + +0.0
4,026,931 + PS417_18545 0.21 -2.1
4,026,938 + PS417_18545 0.22 -1.6
4,027,430 - -0.3

Or see this region's nucleotide sequence