Experiment: Scopoletin 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18300 and PS417_18305 are separated by 244 nucleotides PS417_18305 and PS417_18310 are separated by 90 nucleotides PS417_18310 and PS417_18315 overlap by 20 nucleotides PS417_18315 and PS417_18320 are separated by 3 nucleotides
PS417_18300: PS417_18300 - transcriptional regulator, at 3,989,889 to 3,990,572
_18300
PS417_18305: PS417_18305 - tRNA-Pro, at 3,990,817 to 3,990,893
_18305
PS417_18310: PS417_18310 - hypothetical protein, at 3,990,984 to 3,991,340
_18310
PS417_18315: PS417_18315 - integration host factor subunit alpha, at 3,991,321 to 3,991,623
_18315
PS417_18320: PS417_18320 - phenylalanyl-tRNA synthetase, at 3,991,627 to 3,994,005
_18320
Position (kb)
3990
3991
3992 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3990.189 kb on + strand, within PS417_18300 at 3990.189 kb on + strand, within PS417_18300 at 3990.190 kb on - strand, within PS417_18300 at 3990.221 kb on - strand, within PS417_18300 at 3990.426 kb on + strand, within PS417_18300 at 3990.460 kb on + strand, within PS417_18300 at 3990.534 kb on + strand at 3991.123 kb on + strand, within PS417_18310 at 3991.172 kb on - strand, within PS417_18310 at 3991.240 kb on - strand, within PS417_18310
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress remove 3,990,189 + PS417_18300 0.44 -0.7 3,990,189 + PS417_18300 0.44 -1.1 3,990,190 - PS417_18300 0.44 -0.4 3,990,221 - PS417_18300 0.49 -1.2 3,990,426 + PS417_18300 0.79 +0.1 3,990,460 + PS417_18300 0.83 -0.2 3,990,534 + -0.0 3,991,123 + PS417_18310 0.39 +0.6 3,991,172 - PS417_18310 0.53 +4.0 3,991,240 - PS417_18310 0.72 +1.2
Or see this region's nucleotide sequence