Strain Fitness in Pseudomonas simiae WCS417 around PS417_18020

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18010 and PS417_18015 are separated by 45 nucleotidesPS417_18015 and PS417_18020 are separated by 10 nucleotidesPS417_18020 and PS417_18025 are separated by 231 nucleotidesPS417_18025 and PS417_18035 are separated by 167 nucleotides PS417_18010: PS417_18010 - acid phosphatase, at 3,927,488 to 3,928,312 _18010 PS417_18015: PS417_18015 - membrane protein, at 3,928,358 to 3,929,131 _18015 PS417_18020: PS417_18020 - hypothetical protein, at 3,929,142 to 3,929,534 _18020 PS417_18025: PS417_18025 - cytochrome C, at 3,929,766 to 3,930,143 _18025 PS417_18035: PS417_18035 - general secretion pathway protein GspD, at 3,930,311 to 3,932,422 _18035 Position (kb) 3929 3930Strain fitness (log2 ratio) -1 0 1at 3928.167 kb on - strand, within PS417_18010at 3928.214 kb on + strand, within PS417_18010at 3928.227 kb on - strand, within PS417_18010at 3928.563 kb on + strand, within PS417_18015at 3928.564 kb on - strand, within PS417_18015at 3929.151 kb on - strandat 3929.302 kb on + strand, within PS417_18020at 3929.303 kb on - strand, within PS417_18020at 3929.547 kb on - strandat 3929.623 kb on + strandat 3929.623 kb on + strandat 3929.643 kb on - strandat 3929.710 kb on - strandat 3929.722 kb on - strandat 3929.728 kb on + strandat 3929.857 kb on - strand, within PS417_18025at 3929.858 kb on + strand, within PS417_18025at 3929.859 kb on - strand, within PS417_18025at 3929.859 kb on - strand, within PS417_18025at 3930.007 kb on + strand, within PS417_18025at 3930.008 kb on - strand, within PS417_18025at 3930.008 kb on - strandat 3930.059 kb on - strand, within PS417_18025at 3930.059 kb on - strand, within PS417_18025at 3930.111 kb on + strandat 3930.302 kb on + strandat 3930.306 kb on + strandat 3930.306 kb on + strandat 3930.306 kb on + strandat 3930.307 kb on - strandat 3930.307 kb on - strandat 3930.307 kb on - strandat 3930.307 kb on - strandat 3930.307 kb on - strandat 3930.307 kb on - strandat 3930.307 kb on - strandat 3930.312 kb on + strandat 3930.312 kb on + strandat 3930.312 kb on + strandat 3930.313 kb on - strandat 3930.394 kb on + strandat 3930.394 kb on + strandat 3930.401 kb on - strandat 3930.483 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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3,928,167 - PS417_18010 0.82 -0.5
3,928,214 + PS417_18010 0.88 +0.7
3,928,227 - PS417_18010 0.90 +0.1
3,928,563 + PS417_18015 0.26 +0.9
3,928,564 - PS417_18015 0.27 -1.0
3,929,151 - -0.1
3,929,302 + PS417_18020 0.41 -1.6
3,929,303 - PS417_18020 0.41 +0.1
3,929,547 - +0.0
3,929,623 + -0.2
3,929,623 + -0.8
3,929,643 - +1.4
3,929,710 - -0.1
3,929,722 - +1.2
3,929,728 + -0.9
3,929,857 - PS417_18025 0.24 +0.1
3,929,858 + PS417_18025 0.24 +0.4
3,929,859 - PS417_18025 0.25 +0.2
3,929,859 - PS417_18025 0.25 +0.9
3,930,007 + PS417_18025 0.64 +0.2
3,930,008 - PS417_18025 0.64 -0.0
3,930,008 - +1.7
3,930,059 - PS417_18025 0.78 +0.7
3,930,059 - PS417_18025 0.78 +1.2
3,930,111 + +0.5
3,930,302 + +0.7
3,930,306 + +1.0
3,930,306 + +1.0
3,930,306 + -1.0
3,930,307 - +0.3
3,930,307 - +0.2
3,930,307 - -0.3
3,930,307 - +1.2
3,930,307 - -0.7
3,930,307 - +0.3
3,930,307 - -0.5
3,930,312 + +0.5
3,930,312 + -0.9
3,930,312 + +0.6
3,930,313 - -0.3
3,930,394 + +0.0
3,930,394 + -0.8
3,930,401 - -0.7
3,930,483 + -0.2

Or see this region's nucleotide sequence