Strain Fitness in Pseudomonas simiae WCS417 around PS417_17680

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17670 and PS417_17675 overlap by 4 nucleotidesPS417_17675 and PS417_17680 overlap by 1 nucleotidesPS417_17680 and PS417_17685 are separated by 13 nucleotides PS417_17670: PS417_17670 - ABC transporter permease, at 3,857,359 to 3,858,369 _17670 PS417_17675: PS417_17675 - ABC transporter, at 3,858,366 to 3,859,115 _17675 PS417_17680: PS417_17680 - ABC transporter, at 3,859,115 to 3,859,810 _17680 PS417_17685: PS417_17685 - allantoate amidohydrolase, at 3,859,824 to 3,861,092 _17685 Position (kb) 3859 3860Strain fitness (log2 ratio) -1 0 1 2at 3858.627 kb on - strand, within PS417_17675at 3859.095 kb on + strandat 3859.133 kb on - strandat 3859.142 kb on + strandat 3859.145 kb on + strandat 3859.452 kb on - strand, within PS417_17680at 3859.452 kb on - strand, within PS417_17680at 3859.712 kb on + strand, within PS417_17680at 3859.712 kb on + strand, within PS417_17680at 3859.830 kb on - strandat 3860.039 kb on + strand, within PS417_17685at 3860.285 kb on + strand, within PS417_17685

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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3,858,627 - PS417_17675 0.35 -1.1
3,859,095 + +2.4
3,859,133 - -0.4
3,859,142 + -0.8
3,859,145 + -0.2
3,859,452 - PS417_17680 0.48 -1.4
3,859,452 - PS417_17680 0.48 -1.0
3,859,712 + PS417_17680 0.86 -1.6
3,859,712 + PS417_17680 0.86 +1.0
3,859,830 - -1.0
3,860,039 + PS417_17685 0.17 +1.2
3,860,285 + PS417_17685 0.36 -0.2

Or see this region's nucleotide sequence