Strain Fitness in Pseudomonas simiae WCS417 around PS417_10265

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10255 and PS417_10260 are separated by 157 nucleotidesPS417_10260 and PS417_10265 overlap by 1 nucleotidesPS417_10265 and PS417_10270 overlap by 1 nucleotidesPS417_10270 and PS417_10275 overlap by 4 nucleotides PS417_10255: PS417_10255 - hypothetical protein, at 2,192,710 to 2,193,789 _10255 PS417_10260: PS417_10260 - peptidase, at 2,193,947 to 2,194,249 _10260 PS417_10265: PS417_10265 - peptidase, at 2,194,249 to 2,194,560 _10265 PS417_10270: PS417_10270 - transcriptional regulator, at 2,194,560 to 2,195,228 _10270 PS417_10275: PS417_10275 - histidine kinase, at 2,195,225 to 2,196,544 _10275 Position (kb) 2194 2195Strain fitness (log2 ratio) -2 -1 0 1at 2193.372 kb on + strand, within PS417_10255at 2193.372 kb on + strand, within PS417_10255at 2193.372 kb on + strand, within PS417_10255at 2193.373 kb on - strand, within PS417_10255at 2193.373 kb on - strand, within PS417_10255at 2193.498 kb on - strand, within PS417_10255at 2193.648 kb on + strand, within PS417_10255at 2193.723 kb on + strandat 2193.790 kb on - strandat 2193.820 kb on - strandat 2193.821 kb on + strandat 2193.890 kb on - strandat 2193.943 kb on + strandat 2193.943 kb on + strandat 2193.943 kb on + strandat 2193.943 kb on + strandat 2193.944 kb on - strandat 2193.944 kb on - strandat 2193.944 kb on - strandat 2193.944 kb on - strandat 2193.944 kb on - strandat 2193.979 kb on + strand, within PS417_10260at 2194.051 kb on + strand, within PS417_10260at 2194.052 kb on - strand, within PS417_10260at 2194.054 kb on + strand, within PS417_10260at 2194.055 kb on - strand, within PS417_10260at 2194.055 kb on - strand, within PS417_10260at 2194.055 kb on - strand, within PS417_10260at 2194.139 kb on + strand, within PS417_10260at 2194.148 kb on + strand, within PS417_10260at 2194.148 kb on + strand, within PS417_10260at 2194.149 kb on - strand, within PS417_10260at 2194.154 kb on + strand, within PS417_10260at 2194.154 kb on + strand, within PS417_10260at 2194.248 kb on - strandat 2194.263 kb on - strandat 2194.330 kb on - strand, within PS417_10265at 2194.463 kb on - strand, within PS417_10265at 2194.463 kb on - strand, within PS417_10265at 2194.469 kb on - strand, within PS417_10265at 2194.692 kb on + strand, within PS417_10270at 2194.852 kb on - strandat 2194.884 kb on + strand, within PS417_10270at 2195.040 kb on + strand, within PS417_10270at 2195.097 kb on + strand, within PS417_10270at 2195.097 kb on + strand, within PS417_10270at 2195.281 kb on - strandat 2195.281 kb on - strandat 2195.281 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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2,193,372 + PS417_10255 0.61 -0.3
2,193,372 + PS417_10255 0.61 +0.2
2,193,372 + PS417_10255 0.61 +0.1
2,193,373 - PS417_10255 0.61 -0.2
2,193,373 - PS417_10255 0.61 +0.7
2,193,498 - PS417_10255 0.73 -0.6
2,193,648 + PS417_10255 0.87 +0.4
2,193,723 + +0.2
2,193,790 - -0.3
2,193,820 - -0.5
2,193,821 + +1.6
2,193,890 - -0.3
2,193,943 + +0.6
2,193,943 + -0.1
2,193,943 + +0.2
2,193,943 + +0.6
2,193,944 - -0.2
2,193,944 - +0.7
2,193,944 - +0.9
2,193,944 - +1.1
2,193,944 - +0.9
2,193,979 + PS417_10260 0.11 +0.0
2,194,051 + PS417_10260 0.34 -0.4
2,194,052 - PS417_10260 0.35 -0.6
2,194,054 + PS417_10260 0.35 +0.5
2,194,055 - PS417_10260 0.36 +1.4
2,194,055 - PS417_10260 0.36 +0.1
2,194,055 - PS417_10260 0.36 -0.1
2,194,139 + PS417_10260 0.63 -0.3
2,194,148 + PS417_10260 0.66 -0.2
2,194,148 + PS417_10260 0.66 +0.7
2,194,149 - PS417_10260 0.67 -0.6
2,194,154 + PS417_10260 0.68 -0.4
2,194,154 + PS417_10260 0.68 +0.4
2,194,248 - -0.9
2,194,263 - -1.1
2,194,330 - PS417_10265 0.26 -1.5
2,194,463 - PS417_10265 0.69 -0.9
2,194,463 - PS417_10265 0.69 -0.8
2,194,469 - PS417_10265 0.71 -2.3
2,194,692 + PS417_10270 0.20 -0.5
2,194,852 - +0.3
2,194,884 + PS417_10270 0.48 -0.5
2,195,040 + PS417_10270 0.72 -0.1
2,195,097 + PS417_10270 0.80 +0.7
2,195,097 + PS417_10270 0.80 -0.3
2,195,281 - +0.2
2,195,281 - -2.4
2,195,281 - -0.2

Or see this region's nucleotide sequence