Experiment: Scopoletin 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10255 and PS417_10260 are separated by 157 nucleotides PS417_10260 and PS417_10265 overlap by 1 nucleotides PS417_10265 and PS417_10270 overlap by 1 nucleotides PS417_10270 and PS417_10275 overlap by 4 nucleotides
PS417_10255: PS417_10255 - hypothetical protein, at 2,192,710 to 2,193,789
_10255
PS417_10260: PS417_10260 - peptidase, at 2,193,947 to 2,194,249
_10260
PS417_10265: PS417_10265 - peptidase, at 2,194,249 to 2,194,560
_10265
PS417_10270: PS417_10270 - transcriptional regulator, at 2,194,560 to 2,195,228
_10270
PS417_10275: PS417_10275 - histidine kinase, at 2,195,225 to 2,196,544
_10275
Position (kb)
2194
2195 Strain fitness (log2 ratio)
-2
-1
0
1 at 2193.372 kb on + strand, within PS417_10255 at 2193.372 kb on + strand, within PS417_10255 at 2193.372 kb on + strand, within PS417_10255 at 2193.373 kb on - strand, within PS417_10255 at 2193.373 kb on - strand, within PS417_10255 at 2193.498 kb on - strand, within PS417_10255 at 2193.648 kb on + strand, within PS417_10255 at 2193.723 kb on + strand at 2193.790 kb on - strand at 2193.820 kb on - strand at 2193.821 kb on + strand at 2193.890 kb on - strand at 2193.943 kb on + strand at 2193.943 kb on + strand at 2193.943 kb on + strand at 2193.943 kb on + strand at 2193.944 kb on - strand at 2193.944 kb on - strand at 2193.944 kb on - strand at 2193.944 kb on - strand at 2193.944 kb on - strand at 2193.979 kb on + strand, within PS417_10260 at 2194.051 kb on + strand, within PS417_10260 at 2194.052 kb on - strand, within PS417_10260 at 2194.054 kb on + strand, within PS417_10260 at 2194.055 kb on - strand, within PS417_10260 at 2194.055 kb on - strand, within PS417_10260 at 2194.055 kb on - strand, within PS417_10260 at 2194.139 kb on + strand, within PS417_10260 at 2194.148 kb on + strand, within PS417_10260 at 2194.148 kb on + strand, within PS417_10260 at 2194.149 kb on - strand, within PS417_10260 at 2194.154 kb on + strand, within PS417_10260 at 2194.154 kb on + strand, within PS417_10260 at 2194.248 kb on - strand at 2194.263 kb on - strand at 2194.330 kb on - strand, within PS417_10265 at 2194.463 kb on - strand, within PS417_10265 at 2194.463 kb on - strand, within PS417_10265 at 2194.469 kb on - strand, within PS417_10265 at 2194.692 kb on + strand, within PS417_10270 at 2194.852 kb on - strand at 2194.884 kb on + strand, within PS417_10270 at 2195.040 kb on + strand, within PS417_10270 at 2195.097 kb on + strand, within PS417_10270 at 2195.097 kb on + strand, within PS417_10270 at 2195.281 kb on - strand at 2195.281 kb on - strand at 2195.281 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress remove 2,193,372 + PS417_10255 0.61 -0.3 2,193,372 + PS417_10255 0.61 +0.2 2,193,372 + PS417_10255 0.61 +0.1 2,193,373 - PS417_10255 0.61 -0.2 2,193,373 - PS417_10255 0.61 +0.7 2,193,498 - PS417_10255 0.73 -0.6 2,193,648 + PS417_10255 0.87 +0.4 2,193,723 + +0.2 2,193,790 - -0.3 2,193,820 - -0.5 2,193,821 + +1.6 2,193,890 - -0.3 2,193,943 + +0.6 2,193,943 + -0.1 2,193,943 + +0.2 2,193,943 + +0.6 2,193,944 - -0.2 2,193,944 - +0.7 2,193,944 - +0.9 2,193,944 - +1.1 2,193,944 - +0.9 2,193,979 + PS417_10260 0.11 +0.0 2,194,051 + PS417_10260 0.34 -0.4 2,194,052 - PS417_10260 0.35 -0.6 2,194,054 + PS417_10260 0.35 +0.5 2,194,055 - PS417_10260 0.36 +1.4 2,194,055 - PS417_10260 0.36 +0.1 2,194,055 - PS417_10260 0.36 -0.1 2,194,139 + PS417_10260 0.63 -0.3 2,194,148 + PS417_10260 0.66 -0.2 2,194,148 + PS417_10260 0.66 +0.7 2,194,149 - PS417_10260 0.67 -0.6 2,194,154 + PS417_10260 0.68 -0.4 2,194,154 + PS417_10260 0.68 +0.4 2,194,248 - -0.9 2,194,263 - -1.1 2,194,330 - PS417_10265 0.26 -1.5 2,194,463 - PS417_10265 0.69 -0.9 2,194,463 - PS417_10265 0.69 -0.8 2,194,469 - PS417_10265 0.71 -2.3 2,194,692 + PS417_10270 0.20 -0.5 2,194,852 - +0.3 2,194,884 + PS417_10270 0.48 -0.5 2,195,040 + PS417_10270 0.72 -0.1 2,195,097 + PS417_10270 0.80 +0.7 2,195,097 + PS417_10270 0.80 -0.3 2,195,281 - +0.2 2,195,281 - -2.4 2,195,281 - -0.2
Or see this region's nucleotide sequence