Strain Fitness in Pseudomonas simiae WCS417 around PS417_08795

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08790 and PS417_08795 overlap by 11 nucleotidesPS417_08795 and PS417_08800 are separated by 182 nucleotides PS417_08790: PS417_08790 - pyruvate kinase, at 1,911,914 to 1,913,329 _08790 PS417_08795: PS417_08795 - hydroxypyruvate reductase, at 1,913,319 to 1,914,599 _08795 PS417_08800: PS417_08800 - tartronate semialdehyde reductase, at 1,914,782 to 1,915,672 _08800 Position (kb) 1913 1914 1915Strain fitness (log2 ratio) -2 -1 0 1at 1912.543 kb on + strand, within PS417_08790at 1912.543 kb on + strand, within PS417_08790at 1912.745 kb on + strand, within PS417_08790at 1912.862 kb on - strand, within PS417_08790at 1912.890 kb on - strand, within PS417_08790at 1913.563 kb on + strand, within PS417_08795at 1913.563 kb on + strand, within PS417_08795at 1914.064 kb on + strand, within PS417_08795at 1914.064 kb on + strand, within PS417_08795at 1914.066 kb on + strand, within PS417_08795at 1914.067 kb on - strand, within PS417_08795at 1914.067 kb on - strand, within PS417_08795at 1914.599 kb on + strandat 1914.600 kb on - strandat 1914.600 kb on - strandat 1914.625 kb on - strandat 1914.625 kb on - strandat 1915.326 kb on + strand, within PS417_08800

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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1,912,543 + PS417_08790 0.44 +0.3
1,912,543 + PS417_08790 0.44 -0.2
1,912,745 + PS417_08790 0.59 +0.7
1,912,862 - PS417_08790 0.67 -1.8
1,912,890 - PS417_08790 0.69 +0.7
1,913,563 + PS417_08795 0.19 -0.0
1,913,563 + PS417_08795 0.19 +1.2
1,914,064 + PS417_08795 0.58 +0.1
1,914,064 + PS417_08795 0.58 +0.4
1,914,066 + PS417_08795 0.58 +0.3
1,914,067 - PS417_08795 0.58 -0.1
1,914,067 - PS417_08795 0.58 -0.1
1,914,599 + +0.1
1,914,600 - +0.2
1,914,600 - +0.6
1,914,625 - -0.2
1,914,625 - +0.3
1,915,326 + PS417_08800 0.61 +0.5

Or see this region's nucleotide sequence