Strain Fitness in Pseudomonas simiae WCS417 around PS417_00330

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00315 and PS417_00320 are separated by 6 nucleotidesPS417_00320 and PS417_00325 are separated by 28 nucleotidesPS417_00325 and PS417_00330 overlap by 35 nucleotidesPS417_00330 and PS417_00335 are separated by 10 nucleotides PS417_00315: PS417_00315 - MFS transporter, at 62,487 to 63,374 _00315 PS417_00320: PS417_00320 - hypothetical protein, at 63,381 to 63,584 _00320 PS417_00325: PS417_00325 - hypothetical protein, at 63,613 to 64,377 _00325 PS417_00330: PS417_00330 - hypothetical protein, at 64,343 to 64,927 _00330 PS417_00335: PS417_00335 - cytochrome B561, at 64,938 to 66,017 _00335 Position (kb) 64 65Strain fitness (log2 ratio) -2 -1 0 1 2 3at 63.364 kb on - strandat 63.364 kb on - strandat 63.364 kb on - strandat 63.624 kb on + strandat 63.624 kb on + strandat 63.625 kb on - strandat 63.625 kb on - strandat 63.625 kb on - strandat 63.625 kb on - strandat 63.625 kb on - strandat 63.627 kb on - strandat 63.638 kb on + strandat 63.638 kb on + strandat 63.639 kb on - strandat 63.760 kb on + strand, within PS417_00325at 63.761 kb on - strand, within PS417_00325at 63.761 kb on - strand, within PS417_00325at 63.761 kb on - strand, within PS417_00325at 63.761 kb on - strand, within PS417_00325at 64.051 kb on + strand, within PS417_00325at 64.052 kb on - strand, within PS417_00325at 64.052 kb on - strand, within PS417_00325at 64.174 kb on + strand, within PS417_00325at 64.303 kb on + strandat 64.303 kb on + strandat 64.303 kb on + strandat 64.303 kb on + strandat 64.310 kb on - strandat 64.463 kb on + strand, within PS417_00330at 64.463 kb on + strandat 64.463 kb on + strand, within PS417_00330at 64.464 kb on - strand, within PS417_00330at 64.499 kb on + strand, within PS417_00330at 64.499 kb on + strand, within PS417_00330at 64.542 kb on + strand, within PS417_00330at 64.543 kb on - strand, within PS417_00330at 64.543 kb on - strand, within PS417_00330at 64.625 kb on + strand, within PS417_00330at 64.625 kb on + strand, within PS417_00330at 64.716 kb on - strand, within PS417_00330at 64.853 kb on + strand, within PS417_00330at 64.853 kb on + strand, within PS417_00330at 65.010 kb on + strandat 65.012 kb on + strandat 65.013 kb on - strandat 65.013 kb on - strandat 65.013 kb on - strandat 65.061 kb on + strand, within PS417_00335at 65.062 kb on - strand, within PS417_00335at 65.172 kb on + strand, within PS417_00335at 65.417 kb on - strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.604 kb on - strand, within PS417_00335at 65.604 kb on - strand, within PS417_00335at 65.625 kb on + strand, within PS417_00335at 65.625 kb on + strand, within PS417_00335at 65.626 kb on - strand, within PS417_00335at 65.626 kb on - strand, within PS417_00335at 65.626 kb on - strand, within PS417_00335at 65.740 kb on + strand, within PS417_00335at 65.741 kb on - strand, within PS417_00335at 65.741 kb on - strand, within PS417_00335at 65.745 kb on - strand, within PS417_00335at 65.814 kb on + strand, within PS417_00335at 65.815 kb on - strand, within PS417_00335at 65.895 kb on + strand, within PS417_00335at 65.896 kb on - strand, within PS417_00335at 65.896 kb on - strand, within PS417_00335

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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63,364 - -0.1
63,364 - +0.2
63,364 - +0.1
63,624 + +3.5
63,624 + -0.9
63,625 - +0.1
63,625 - +0.7
63,625 - +1.0
63,625 - -1.4
63,625 - -0.3
63,627 - -0.3
63,638 + -0.6
63,638 + -0.5
63,639 - -0.6
63,760 + PS417_00325 0.19 +1.7
63,761 - PS417_00325 0.19 -0.6
63,761 - PS417_00325 0.19 -1.3
63,761 - PS417_00325 0.19 +0.3
63,761 - PS417_00325 0.19 -0.7
64,051 + PS417_00325 0.57 +1.3
64,052 - PS417_00325 0.57 +0.7
64,052 - PS417_00325 0.57 +1.3
64,174 + PS417_00325 0.73 -0.4
64,303 + +0.8
64,303 + -0.9
64,303 + -0.2
64,303 + -1.4
64,310 - +0.4
64,463 + PS417_00330 0.21 -0.6
64,463 + +1.1
64,463 + PS417_00330 0.21 -0.4
64,464 - PS417_00330 0.21 -0.7
64,499 + PS417_00330 0.27 +0.1
64,499 + PS417_00330 0.27 -0.1
64,542 + PS417_00330 0.34 -0.8
64,543 - PS417_00330 0.34 +1.3
64,543 - PS417_00330 0.34 -1.4
64,625 + PS417_00330 0.48 -0.3
64,625 + PS417_00330 0.48 -2.1
64,716 - PS417_00330 0.64 -0.0
64,853 + PS417_00330 0.87 +1.1
64,853 + PS417_00330 0.87 +0.8
65,010 + -0.1
65,012 + -2.4
65,013 - +1.5
65,013 - +1.3
65,013 - -1.2
65,061 + PS417_00335 0.11 +0.6
65,062 - PS417_00335 0.11 -0.7
65,172 + PS417_00335 0.22 -0.3
65,417 - PS417_00335 0.44 -0.9
65,603 + PS417_00335 0.62 +0.4
65,603 + PS417_00335 0.62 +0.1
65,603 + PS417_00335 0.62 -0.2
65,603 + PS417_00335 0.62 -1.1
65,604 - PS417_00335 0.62 +0.2
65,604 - PS417_00335 0.62 +0.4
65,625 + PS417_00335 0.64 -0.2
65,625 + PS417_00335 0.64 -0.4
65,626 - PS417_00335 0.64 -1.0
65,626 - PS417_00335 0.64 -1.2
65,626 - PS417_00335 0.64 +0.1
65,740 + PS417_00335 0.74 -0.4
65,741 - PS417_00335 0.74 -0.1
65,741 - PS417_00335 0.74 +1.3
65,745 - PS417_00335 0.75 -0.8
65,814 + PS417_00335 0.81 +0.3
65,815 - PS417_00335 0.81 -0.2
65,895 + PS417_00335 0.89 -0.8
65,896 - PS417_00335 0.89 +1.8
65,896 - PS417_00335 0.89 -0.4

Or see this region's nucleotide sequence