Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27875 and PS417_27880 are separated by 117 nucleotides PS417_27880 and PS417_27885 are separated by 124 nucleotides PS417_27885 and PS417_27890 are separated by 84 nucleotides
PS417_27875: PS417_27875 - histidine kinase, at 6,009,071 to 6,010,471
_27875
PS417_27880: PS417_27880 - helicase, at 6,010,589 to 6,010,963
_27880
PS417_27885: PS417_27885 - hypothetical protein, at 6,011,088 to 6,012,008
_27885
PS417_27890: PS417_27890 - type VI secretion protein, at 6,012,093 to 6,013,802
_27890
Position (kb)
6011
6012
6013 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6010.221 kb on + strand, within PS417_27875 at 6010.256 kb on + strand, within PS417_27875 at 6010.256 kb on + strand, within PS417_27875 at 6010.256 kb on + strand at 6010.257 kb on - strand, within PS417_27875 at 6010.257 kb on - strand, within PS417_27875 at 6010.257 kb on - strand, within PS417_27875 at 6010.257 kb on - strand, within PS417_27875 at 6010.412 kb on - strand at 6010.581 kb on + strand at 6010.582 kb on - strand at 6010.586 kb on + strand at 6010.587 kb on - strand at 6010.587 kb on - strand at 6010.590 kb on + strand at 6010.590 kb on + strand at 6010.591 kb on - strand at 6010.614 kb on + strand at 6010.984 kb on + strand at 6011.074 kb on + strand at 6011.074 kb on + strand at 6011.341 kb on - strand, within PS417_27885 at 6011.383 kb on + strand, within PS417_27885 at 6011.395 kb on + strand at 6011.395 kb on + strand, within PS417_27885 at 6011.395 kb on + strand, within PS417_27885 at 6011.630 kb on - strand, within PS417_27885 at 6011.680 kb on + strand, within PS417_27885 at 6011.681 kb on - strand, within PS417_27885 at 6011.878 kb on + strand, within PS417_27885 at 6011.881 kb on + strand, within PS417_27885 at 6011.882 kb on - strand, within PS417_27885 at 6012.008 kb on + strand at 6012.009 kb on - strand at 6012.312 kb on - strand, within PS417_27890 at 6012.314 kb on - strand, within PS417_27890 at 6012.445 kb on + strand, within PS417_27890 at 6012.446 kb on - strand, within PS417_27890 at 6012.838 kb on + strand, within PS417_27890
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 6,010,221 + PS417_27875 0.82 +0.0 6,010,256 + PS417_27875 0.85 +0.8 6,010,256 + PS417_27875 0.85 +0.5 6,010,256 + +2.5 6,010,257 - PS417_27875 0.85 +0.5 6,010,257 - PS417_27875 0.85 +0.8 6,010,257 - PS417_27875 0.85 -1.0 6,010,257 - PS417_27875 0.85 +1.0 6,010,412 - +0.4 6,010,581 + -0.1 6,010,582 - -0.5 6,010,586 + +1.0 6,010,587 - -0.8 6,010,587 - -1.4 6,010,590 + -1.5 6,010,590 + -0.4 6,010,591 - -0.1 6,010,614 + +1.2 6,010,984 + -1.8 6,011,074 + +0.1 6,011,074 + +1.2 6,011,341 - PS417_27885 0.27 +0.3 6,011,383 + PS417_27885 0.32 +0.2 6,011,395 + +1.1 6,011,395 + PS417_27885 0.33 -0.3 6,011,395 + PS417_27885 0.33 +2.1 6,011,630 - PS417_27885 0.59 -2.5 6,011,680 + PS417_27885 0.64 +1.5 6,011,681 - PS417_27885 0.64 -1.6 6,011,878 + PS417_27885 0.86 -0.7 6,011,881 + PS417_27885 0.86 -0.7 6,011,882 - PS417_27885 0.86 -1.0 6,012,008 + +1.0 6,012,009 - +0.6 6,012,312 - PS417_27890 0.13 -1.5 6,012,314 - PS417_27890 0.13 +1.5 6,012,445 + PS417_27890 0.21 +0.2 6,012,446 - PS417_27890 0.21 +2.5 6,012,838 + PS417_27890 0.44 +0.1
Or see this region's nucleotide sequence