Strain Fitness in Pseudomonas simiae WCS417 around PS417_23620

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23615 and PS417_23620 are separated by 196 nucleotidesPS417_23620 and PS417_23625 are separated by 103 nucleotides PS417_23615: PS417_23615 - sulfate transporter, at 5,107,069 to 5,108,514 _23615 PS417_23620: PS417_23620 - epimerase, at 5,108,711 to 5,109,604 _23620 PS417_23625: PS417_23625 - LysR family transcriptional regulator, at 5,109,708 to 5,110,604 _23625 Position (kb) 5108 5109 5110Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5107.847 kb on + strand, within PS417_23615at 5107.968 kb on - strand, within PS417_23615at 5108.273 kb on + strand, within PS417_23615at 5108.274 kb on - strand, within PS417_23615at 5108.308 kb on + strand, within PS417_23615at 5108.520 kb on - strandat 5108.540 kb on - strandat 5108.540 kb on - strandat 5108.577 kb on + strandat 5108.580 kb on + strandat 5108.580 kb on + strandat 5108.580 kb on + strandat 5108.581 kb on - strandat 5108.581 kb on - strandat 5108.581 kb on - strandat 5108.581 kb on - strandat 5108.587 kb on + strandat 5108.588 kb on - strandat 5108.702 kb on - strandat 5108.749 kb on + strandat 5108.750 kb on - strandat 5108.750 kb on - strandat 5108.820 kb on + strand, within PS417_23620at 5108.821 kb on - strand, within PS417_23620at 5108.821 kb on - strand, within PS417_23620at 5108.821 kb on - strand, within PS417_23620at 5108.821 kb on - strand, within PS417_23620at 5108.991 kb on + strand, within PS417_23620at 5108.992 kb on - strand, within PS417_23620at 5109.258 kb on + strand, within PS417_23620at 5109.259 kb on - strand, within PS417_23620at 5109.259 kb on - strandat 5109.591 kb on - strandat 5109.596 kb on + strandat 5109.597 kb on - strandat 5109.642 kb on - strandat 5109.665 kb on + strandat 5109.665 kb on + strandat 5109.666 kb on - strandat 5109.884 kb on + strand, within PS417_23625at 5109.900 kb on - strand, within PS417_23625at 5109.900 kb on - strand, within PS417_23625at 5110.122 kb on - strand, within PS417_23625at 5110.274 kb on - strand, within PS417_23625at 5110.581 kb on + strandat 5110.581 kb on + strandat 5110.582 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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5,107,847 + PS417_23615 0.54 -0.6
5,107,968 - PS417_23615 0.62 -1.9
5,108,273 + PS417_23615 0.83 -0.7
5,108,274 - PS417_23615 0.83 +0.1
5,108,308 + PS417_23615 0.86 +1.9
5,108,520 - +0.3
5,108,540 - -0.2
5,108,540 - -1.2
5,108,577 + -1.2
5,108,580 + +1.5
5,108,580 + -1.0
5,108,580 + -0.0
5,108,581 - +0.2
5,108,581 - +0.0
5,108,581 - -1.2
5,108,581 - -0.2
5,108,587 + -0.1
5,108,588 - -0.4
5,108,702 - -1.3
5,108,749 + -0.2
5,108,750 - +0.3
5,108,750 - -0.7
5,108,820 + PS417_23620 0.12 -0.2
5,108,821 - PS417_23620 0.12 -0.6
5,108,821 - PS417_23620 0.12 +0.5
5,108,821 - PS417_23620 0.12 +0.3
5,108,821 - PS417_23620 0.12 +0.5
5,108,991 + PS417_23620 0.31 -3.0
5,108,992 - PS417_23620 0.31 -0.0
5,109,258 + PS417_23620 0.61 -0.2
5,109,259 - PS417_23620 0.61 +0.8
5,109,259 - +1.4
5,109,591 - -1.8
5,109,596 + -0.2
5,109,597 - -1.0
5,109,642 - +0.9
5,109,665 + -0.8
5,109,665 + +0.5
5,109,666 - -0.1
5,109,884 + PS417_23625 0.20 -1.7
5,109,900 - PS417_23625 0.21 +1.0
5,109,900 - PS417_23625 0.21 +0.8
5,110,122 - PS417_23625 0.46 +0.3
5,110,274 - PS417_23625 0.63 +0.9
5,110,581 + -0.1
5,110,581 + -0.3
5,110,582 - +1.4

Or see this region's nucleotide sequence