Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23605 and PS417_23610 are separated by 194 nucleotides PS417_23610 and PS417_23615 are separated by 122 nucleotides PS417_23615 and PS417_23620 are separated by 196 nucleotides
PS417_23605: PS417_23605 - permease DsdX, at 5,104,968 to 5,106,371
_23605
PS417_23610: PS417_23610 - hypothetical protein, at 5,106,566 to 5,106,946
_23610
PS417_23615: PS417_23615 - sulfate transporter, at 5,107,069 to 5,108,514
_23615
PS417_23620: PS417_23620 - epimerase, at 5,108,711 to 5,109,604
_23620
Position (kb)
5107
5108
5109 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5106.283 kb on + strand at 5106.284 kb on - strand at 5106.284 kb on - strand at 5106.480 kb on + strand at 5106.480 kb on + strand at 5106.480 kb on + strand at 5106.480 kb on + strand at 5106.480 kb on + strand at 5106.481 kb on - strand at 5106.481 kb on - strand at 5106.481 kb on - strand at 5106.530 kb on - strand at 5106.530 kb on - strand at 5106.595 kb on + strand at 5106.635 kb on - strand, within PS417_23610 at 5106.740 kb on + strand, within PS417_23610 at 5106.740 kb on + strand, within PS417_23610 at 5106.740 kb on + strand at 5106.811 kb on - strand, within PS417_23610 at 5106.815 kb on + strand at 5106.815 kb on + strand, within PS417_23610 at 5106.962 kb on + strand at 5107.056 kb on + strand at 5107.847 kb on + strand, within PS417_23615 at 5107.968 kb on - strand, within PS417_23615 at 5108.273 kb on + strand, within PS417_23615 at 5108.274 kb on - strand, within PS417_23615 at 5108.308 kb on + strand, within PS417_23615 at 5108.520 kb on - strand at 5108.540 kb on - strand at 5108.540 kb on - strand at 5108.577 kb on + strand at 5108.580 kb on + strand at 5108.580 kb on + strand at 5108.580 kb on + strand at 5108.581 kb on - strand at 5108.581 kb on - strand at 5108.581 kb on - strand at 5108.581 kb on - strand at 5108.587 kb on + strand at 5108.588 kb on - strand at 5108.702 kb on - strand at 5108.749 kb on + strand at 5108.750 kb on - strand at 5108.750 kb on - strand at 5108.820 kb on + strand, within PS417_23620 at 5108.821 kb on - strand, within PS417_23620 at 5108.821 kb on - strand, within PS417_23620 at 5108.821 kb on - strand, within PS417_23620 at 5108.821 kb on - strand, within PS417_23620 at 5108.991 kb on + strand, within PS417_23620 at 5108.992 kb on - strand, within PS417_23620 at 5109.258 kb on + strand, within PS417_23620 at 5109.259 kb on - strand, within PS417_23620 at 5109.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 5,106,283 + -0.4 5,106,284 - +0.2 5,106,284 - -1.6 5,106,480 + -0.9 5,106,480 + -0.4 5,106,480 + -0.3 5,106,480 + -0.4 5,106,480 + -0.6 5,106,481 - +1.2 5,106,481 - +0.7 5,106,481 - +1.1 5,106,530 - -0.0 5,106,530 - -0.3 5,106,595 + -0.2 5,106,635 - PS417_23610 0.18 -1.5 5,106,740 + PS417_23610 0.46 -0.7 5,106,740 + PS417_23610 0.46 +0.1 5,106,740 + +2.1 5,106,811 - PS417_23610 0.64 -1.3 5,106,815 + +1.2 5,106,815 + PS417_23610 0.65 -0.1 5,106,962 + +0.9 5,107,056 + +0.5 5,107,847 + PS417_23615 0.54 -0.6 5,107,968 - PS417_23615 0.62 -1.9 5,108,273 + PS417_23615 0.83 -0.7 5,108,274 - PS417_23615 0.83 +0.1 5,108,308 + PS417_23615 0.86 +1.9 5,108,520 - +0.3 5,108,540 - -0.2 5,108,540 - -1.2 5,108,577 + -1.2 5,108,580 + +1.5 5,108,580 + -1.0 5,108,580 + -0.0 5,108,581 - +0.2 5,108,581 - +0.0 5,108,581 - -1.2 5,108,581 - -0.2 5,108,587 + -0.1 5,108,588 - -0.4 5,108,702 - -1.3 5,108,749 + -0.2 5,108,750 - +0.3 5,108,750 - -0.7 5,108,820 + PS417_23620 0.12 -0.2 5,108,821 - PS417_23620 0.12 -0.6 5,108,821 - PS417_23620 0.12 +0.5 5,108,821 - PS417_23620 0.12 +0.3 5,108,821 - PS417_23620 0.12 +0.5 5,108,991 + PS417_23620 0.31 -3.0 5,108,992 - PS417_23620 0.31 -0.0 5,109,258 + PS417_23620 0.61 -0.2 5,109,259 - PS417_23620 0.61 +0.8 5,109,259 - +1.4
Or see this region's nucleotide sequence