Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21775 and PS417_21780 are separated by 193 nucleotides PS417_21780 and PS417_21785 are separated by 106 nucleotides
PS417_21775: PS417_21775 - LysR family transcriptional regulator, at 4,728,629 to 4,729,588
_21775
PS417_21780: PS417_21780 - argininosuccinate lyase, at 4,729,782 to 4,731,209
_21780
PS417_21785: PS417_21785 - ABC transporter permease, at 4,731,316 to 4,732,194
_21785
Position (kb) 4729
4730
4731
4732 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4728.882 kb on + strand, within PS417_21775 at 4728.939 kb on + strand, within PS417_21775 at 4728.992 kb on + strand, within PS417_21775 at 4729.002 kb on + strand, within PS417_21775 at 4729.035 kb on + strand, within PS417_21775 at 4729.133 kb on + strand, within PS417_21775 at 4729.134 kb on - strand, within PS417_21775 at 4729.199 kb on - strand, within PS417_21775 at 4729.209 kb on - strand, within PS417_21775 at 4729.268 kb on - strand, within PS417_21775 at 4729.268 kb on - strand, within PS417_21775 at 4729.297 kb on + strand, within PS417_21775 at 4729.297 kb on + strand, within PS417_21775 at 4729.321 kb on - strand, within PS417_21775 at 4729.592 kb on - strand at 4729.660 kb on - strand at 4729.669 kb on - strand at 4729.759 kb on - strand at 4729.873 kb on - strand at 4729.988 kb on + strand, within PS417_21780 at 4730.755 kb on + strand, within PS417_21780 at 4730.756 kb on - strand, within PS417_21780 at 4730.793 kb on - strand, within PS417_21780 at 4730.860 kb on + strand, within PS417_21780 at 4731.189 kb on + strand at 4731.207 kb on + strand at 4731.278 kb on + strand at 4731.279 kb on - strand at 4731.286 kb on + strand at 4731.287 kb on - strand at 4731.388 kb on + strand at 4731.413 kb on - strand, within PS417_21785 at 4731.413 kb on - strand, within PS417_21785 at 4731.619 kb on - strand, within PS417_21785 at 4731.619 kb on - strand, within PS417_21785 at 4731.619 kb on - strand, within PS417_21785 at 4731.814 kb on - strand, within PS417_21785 at 4731.829 kb on + strand, within PS417_21785 at 4731.927 kb on + strand, within PS417_21785 at 4731.928 kb on - strand, within PS417_21785 at 4731.971 kb on + strand, within PS417_21785 at 4731.985 kb on - strand, within PS417_21785 at 4731.985 kb on - strand at 4731.990 kb on + strand, within PS417_21785 at 4732.060 kb on + strand, within PS417_21785 at 4732.060 kb on + strand, within PS417_21785 at 4732.063 kb on + strand, within PS417_21785 at 4732.064 kb on - strand, within PS417_21785 at 4732.064 kb on - strand, within PS417_21785 at 4732.112 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 4,728,882 + PS417_21775 0.26 +0.3 4,728,939 + PS417_21775 0.32 +0.4 4,728,992 + PS417_21775 0.38 +0.7 4,729,002 + PS417_21775 0.39 -0.4 4,729,035 + PS417_21775 0.42 +0.0 4,729,133 + PS417_21775 0.53 +0.3 4,729,134 - PS417_21775 0.53 -0.4 4,729,199 - PS417_21775 0.59 -0.1 4,729,209 - PS417_21775 0.60 -0.4 4,729,268 - PS417_21775 0.67 +0.3 4,729,268 - PS417_21775 0.67 -0.5 4,729,297 + PS417_21775 0.70 +1.4 4,729,297 + PS417_21775 0.70 -0.3 4,729,321 - PS417_21775 0.72 -0.1 4,729,592 - +2.0 4,729,660 - +0.1 4,729,669 - -1.4 4,729,759 - +0.2 4,729,873 - -0.5 4,729,988 + PS417_21780 0.14 -0.7 4,730,755 + PS417_21780 0.68 +0.0 4,730,756 - PS417_21780 0.68 -0.4 4,730,793 - PS417_21780 0.71 -0.9 4,730,860 + PS417_21780 0.75 -2.2 4,731,189 + +0.3 4,731,207 + -0.3 4,731,278 + -1.0 4,731,279 - +0.3 4,731,286 + -1.5 4,731,287 - +0.2 4,731,388 + -1.3 4,731,413 - PS417_21785 0.11 +0.9 4,731,413 - PS417_21785 0.11 +0.2 4,731,619 - PS417_21785 0.34 +0.8 4,731,619 - PS417_21785 0.34 -0.4 4,731,619 - PS417_21785 0.34 -0.0 4,731,814 - PS417_21785 0.57 -0.7 4,731,829 + PS417_21785 0.58 +0.3 4,731,927 + PS417_21785 0.70 +0.4 4,731,928 - PS417_21785 0.70 -0.9 4,731,971 + PS417_21785 0.75 +0.9 4,731,985 - PS417_21785 0.76 +0.1 4,731,985 - +0.8 4,731,990 + PS417_21785 0.77 -0.6 4,732,060 + PS417_21785 0.85 -0.1 4,732,060 + PS417_21785 0.85 +0.1 4,732,063 + PS417_21785 0.85 +0.3 4,732,064 - PS417_21785 0.85 -1.2 4,732,064 - PS417_21785 0.85 -0.9 4,732,112 - +0.5
Or see this region's nucleotide sequence