Strain Fitness in Pseudomonas simiae WCS417 around PS417_21080

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21075 and PS417_21080 are separated by 40 nucleotidesPS417_21080 and PS417_21085 overlap by 1 nucleotidesPS417_21085 and PS417_21090 are separated by 272 nucleotides PS417_21075: PS417_21075 - methylcitrate synthase, at 4,587,428 to 4,588,555 _21075 PS417_21080: PS417_21080 - 2-methylisocitrate lyase, at 4,588,596 to 4,589,489 _21080 PS417_21085: PS417_21085 - GntR family transcriptional regulator, at 4,589,489 to 4,590,199 _21085 PS417_21090: PS417_21090 - hypothetical protein, at 4,590,472 to 4,591,008 _21090 Position (kb) 4588 4589 4590Strain fitness (log2 ratio) -2 -1 0 1at 4588.579 kb on - strandat 4588.598 kb on - strandat 4589.729 kb on - strand, within PS417_21085at 4589.729 kb on - strand, within PS417_21085at 4589.729 kb on - strand, within PS417_21085at 4589.788 kb on - strand, within PS417_21085at 4589.926 kb on - strand, within PS417_21085at 4590.052 kb on - strand, within PS417_21085at 4590.358 kb on + strandat 4590.422 kb on + strandat 4590.423 kb on - strandat 4590.471 kb on + strandat 4590.471 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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4,588,579 - -1.9
4,588,598 - -0.5
4,589,729 - PS417_21085 0.34 -0.5
4,589,729 - PS417_21085 0.34 -0.3
4,589,729 - PS417_21085 0.34 -0.9
4,589,788 - PS417_21085 0.42 -0.5
4,589,926 - PS417_21085 0.61 -0.8
4,590,052 - PS417_21085 0.79 -0.3
4,590,358 + +0.4
4,590,422 + -0.9
4,590,423 - -1.5
4,590,471 + +0.7
4,590,471 + +0.6

Or see this region's nucleotide sequence