Strain Fitness in Pseudomonas simiae WCS417 around PS417_18105

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18095 and PS417_18100 overlap by 4 nucleotidesPS417_18100 and PS417_18105 are separated by 2 nucleotidesPS417_18105 and PS417_18110 are separated by 224 nucleotides PS417_18095: PS417_18095 - iron-dicitrate transporter subunit FecD, at 3,940,935 to 3,941,903 _18095 PS417_18100: PS417_18100 - iron ABC transporter, at 3,941,900 to 3,942,889 _18100 PS417_18105: PS417_18105 - iron-dicitrate transporter substrate-binding subunit, at 3,942,892 to 3,943,812 _18105 PS417_18110: PS417_18110 - TonB-dependent receptor, at 3,944,037 to 3,946,427 _18110 Position (kb) 3942 3943 3944Strain fitness (log2 ratio) -2 -1 0 1 2at 3942.646 kb on + strand, within PS417_18100at 3942.646 kb on + strand, within PS417_18100at 3942.739 kb on - strand, within PS417_18100at 3942.739 kb on - strand, within PS417_18100at 3942.739 kb on - strand, within PS417_18100at 3942.739 kb on - strand, within PS417_18100at 3942.746 kb on - strand, within PS417_18100at 3942.823 kb on - strandat 3942.905 kb on - strandat 3943.215 kb on - strand, within PS417_18105at 3943.457 kb on + strand, within PS417_18105at 3943.871 kb on + strandat 3943.957 kb on - strandat 3943.957 kb on - strandat 3943.957 kb on - strandat 3943.969 kb on - strandat 3944.039 kb on - strandat 3944.070 kb on - strandat 3944.131 kb on + strandat 3944.263 kb on + strandat 3944.351 kb on - strand, within PS417_18110at 3944.388 kb on - strand, within PS417_18110at 3944.422 kb on + strand, within PS417_18110at 3944.422 kb on + strand, within PS417_18110at 3944.422 kb on + strand, within PS417_18110at 3944.423 kb on - strand, within PS417_18110at 3944.599 kb on + strand, within PS417_18110at 3944.705 kb on - strand, within PS417_18110at 3944.705 kb on - strand, within PS417_18110at 3944.705 kb on - strand, within PS417_18110at 3944.705 kb on - strand, within PS417_18110

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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3,942,646 + PS417_18100 0.75 -0.3
3,942,646 + PS417_18100 0.75 +0.4
3,942,739 - PS417_18100 0.85 +0.1
3,942,739 - PS417_18100 0.85 -1.7
3,942,739 - PS417_18100 0.85 +0.3
3,942,739 - PS417_18100 0.85 -1.3
3,942,746 - PS417_18100 0.85 -0.1
3,942,823 - -1.1
3,942,905 - +0.1
3,943,215 - PS417_18105 0.35 -1.6
3,943,457 + PS417_18105 0.61 -0.5
3,943,871 + +0.0
3,943,957 - -0.4
3,943,957 - -1.2
3,943,957 - -2.4
3,943,969 - -0.4
3,944,039 - +0.9
3,944,070 - -1.1
3,944,131 + +1.3
3,944,263 + -1.0
3,944,351 - PS417_18110 0.13 +1.1
3,944,388 - PS417_18110 0.15 -0.4
3,944,422 + PS417_18110 0.16 +0.2
3,944,422 + PS417_18110 0.16 +0.8
3,944,422 + PS417_18110 0.16 -0.3
3,944,423 - PS417_18110 0.16 +0.4
3,944,599 + PS417_18110 0.24 +2.0
3,944,705 - PS417_18110 0.28 -2.6
3,944,705 - PS417_18110 0.28 +0.1
3,944,705 - PS417_18110 0.28 -0.5
3,944,705 - PS417_18110 0.28 -0.2

Or see this region's nucleotide sequence