Strain Fitness in Pseudomonas simiae WCS417 around PS417_16925

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16920 and PS417_16925 overlap by 4 nucleotidesPS417_16925 and PS417_16930 are separated by 169 nucleotides PS417_16920: PS417_16920 - multidrug RND transporter, at 3,688,588 to 3,690,039 _16920 PS417_16925: PS417_16925 - MarR family transcriptional regulator, at 3,690,036 to 3,690,509 _16925 PS417_16930: PS417_16930 - histidine kinase, at 3,690,679 to 3,693,465 _16930 Position (kb) 3690 3691Strain fitness (log2 ratio) -2 -1 0 1 2at 3689.495 kb on + strand, within PS417_16920at 3689.496 kb on - strand, within PS417_16920at 3689.618 kb on + strand, within PS417_16920at 3689.756 kb on + strand, within PS417_16920at 3689.978 kb on + strandat 3689.979 kb on - strandat 3690.023 kb on - strandat 3690.023 kb on - strandat 3690.522 kb on + strandat 3690.545 kb on + strandat 3690.546 kb on - strandat 3690.590 kb on - strandat 3690.592 kb on + strandat 3690.631 kb on - strandat 3690.631 kb on - strandat 3690.667 kb on + strandat 3690.668 kb on - strandat 3690.686 kb on + strandat 3690.717 kb on - strandat 3690.717 kb on - strandat 3690.768 kb on - strandat 3690.796 kb on + strandat 3690.847 kb on + strandat 3690.848 kb on - strandat 3691.070 kb on - strand, within PS417_16930at 3691.070 kb on - strand, within PS417_16930at 3691.070 kb on - strand, within PS417_16930at 3691.102 kb on + strandat 3691.228 kb on + strandat 3691.228 kb on + strand, within PS417_16930at 3691.228 kb on + strand, within PS417_16930at 3691.228 kb on + strand, within PS417_16930at 3691.228 kb on + strand, within PS417_16930at 3691.228 kb on + strand, within PS417_16930at 3691.229 kb on - strand, within PS417_16930at 3691.229 kb on - strand, within PS417_16930at 3691.359 kb on + strand, within PS417_16930at 3691.360 kb on - strand, within PS417_16930at 3691.384 kb on - strand, within PS417_16930at 3691.384 kb on - strand, within PS417_16930

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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3,689,495 + PS417_16920 0.62 +1.1
3,689,496 - PS417_16920 0.63 -0.7
3,689,618 + PS417_16920 0.71 -1.3
3,689,756 + PS417_16920 0.80 +0.7
3,689,978 + -0.3
3,689,979 - -0.2
3,690,023 - -0.2
3,690,023 - +1.3
3,690,522 + -0.7
3,690,545 + +0.4
3,690,546 - +0.6
3,690,590 - -0.0
3,690,592 + +0.1
3,690,631 - -0.2
3,690,631 - -0.2
3,690,667 + -1.3
3,690,668 - -0.0
3,690,686 + +1.7
3,690,717 - -1.2
3,690,717 - -2.1
3,690,768 - +0.1
3,690,796 + +2.3
3,690,847 + +0.5
3,690,848 - -0.1
3,691,070 - PS417_16930 0.14 -0.9
3,691,070 - PS417_16930 0.14 +0.4
3,691,070 - PS417_16930 0.14 -0.6
3,691,102 + +1.0
3,691,228 + +2.0
3,691,228 + PS417_16930 0.20 +0.4
3,691,228 + PS417_16930 0.20 -0.5
3,691,228 + PS417_16930 0.20 -0.3
3,691,228 + PS417_16930 0.20 -0.0
3,691,228 + PS417_16930 0.20 -0.6
3,691,229 - PS417_16930 0.20 -0.2
3,691,229 - PS417_16930 0.20 -0.3
3,691,359 + PS417_16930 0.24 +0.1
3,691,360 - PS417_16930 0.24 -1.2
3,691,384 - PS417_16930 0.25 +0.6
3,691,384 - PS417_16930 0.25 -0.7

Or see this region's nucleotide sequence