Strain Fitness in Pseudomonas simiae WCS417 around PS417_16765

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16760 and PS417_16765 overlap by 11 nucleotidesPS417_16765 and PS417_16770 are separated by 231 nucleotides PS417_16760: PS417_16760 - membrane protein, at 3,655,513 to 3,656,991 _16760 PS417_16765: PS417_16765 - transporter, at 3,656,981 to 3,658,228 _16765 PS417_16770: PS417_16770 - pyridine nucleotide-disulfide oxidoreductase, at 3,658,460 to 3,659,851 _16770 Position (kb) 3656 3657 3658 3659Strain fitness (log2 ratio) -1 0 1 2at 3656.584 kb on + strand, within PS417_16760at 3656.585 kb on - strand, within PS417_16760at 3656.626 kb on - strand, within PS417_16760at 3656.679 kb on + strand, within PS417_16760at 3657.015 kb on + strandat 3657.016 kb on - strandat 3657.019 kb on + strandat 3657.020 kb on - strandat 3657.027 kb on + strandat 3657.243 kb on + strand, within PS417_16765at 3657.243 kb on + strandat 3657.243 kb on + strand, within PS417_16765at 3657.243 kb on + strand, within PS417_16765at 3657.381 kb on + strand, within PS417_16765at 3657.569 kb on + strand, within PS417_16765at 3657.695 kb on - strand, within PS417_16765at 3657.722 kb on - strand, within PS417_16765at 3658.046 kb on + strand, within PS417_16765at 3658.047 kb on - strand, within PS417_16765at 3658.047 kb on - strand, within PS417_16765at 3658.047 kb on - strand, within PS417_16765at 3658.226 kb on + strandat 3658.226 kb on + strandat 3658.227 kb on - strandat 3658.227 kb on - strandat 3658.346 kb on + strandat 3658.347 kb on - strandat 3658.347 kb on - strandat 3658.347 kb on - strandat 3658.418 kb on + strandat 3658.418 kb on + strandat 3658.419 kb on - strandat 3658.502 kb on + strandat 3658.503 kb on - strandat 3659.221 kb on + strand, within PS417_16770

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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3,656,584 + PS417_16760 0.72 -0.1
3,656,585 - PS417_16760 0.72 +0.2
3,656,626 - PS417_16760 0.75 -0.1
3,656,679 + PS417_16760 0.79 +1.7
3,657,015 + -0.3
3,657,016 - -0.2
3,657,019 + +1.8
3,657,020 - -0.4
3,657,027 + -0.8
3,657,243 + PS417_16765 0.21 +2.5
3,657,243 + +1.8
3,657,243 + PS417_16765 0.21 -0.7
3,657,243 + PS417_16765 0.21 +0.2
3,657,381 + PS417_16765 0.32 -0.1
3,657,569 + PS417_16765 0.47 -0.6
3,657,695 - PS417_16765 0.57 +0.0
3,657,722 - PS417_16765 0.59 -0.2
3,658,046 + PS417_16765 0.85 +0.4
3,658,047 - PS417_16765 0.85 -0.5
3,658,047 - PS417_16765 0.85 +0.4
3,658,047 - PS417_16765 0.85 -0.0
3,658,226 + +0.6
3,658,226 + -0.5
3,658,227 - -0.3
3,658,227 - +0.3
3,658,346 + -0.4
3,658,347 - +0.7
3,658,347 - +1.2
3,658,347 - -0.4
3,658,418 + -0.3
3,658,418 + -0.5
3,658,419 - -0.4
3,658,502 + +0.5
3,658,503 - +0.1
3,659,221 + PS417_16770 0.55 -0.5

Or see this region's nucleotide sequence