Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13070 and PS417_13075 are separated by 385 nucleotides PS417_13075 and PS417_13080 overlap by 4 nucleotides PS417_13080 and PS417_13085 are separated by 125 nucleotides PS417_13085 and PS417_13090 are separated by 228 nucleotides
PS417_13070: PS417_13070 - membrane protein, at 2,856,507 to 2,856,890
_13070
PS417_13075: PS417_13075 - hypothetical protein, at 2,857,276 to 2,857,632
_13075
PS417_13080: PS417_13080 - LysR family transcriptional regulator, at 2,857,629 to 2,858,537
_13080
PS417_13085: PS417_13085 - FMN-dependent NADH-azoreductase, at 2,858,663 to 2,859,274
_13085
PS417_13090: PS417_13090 - dienelactone hydrolase, at 2,859,503 to 2,860,540
_13090
Position (kb)
2857
2858
2859 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2857.057 kb on - strand at 2857.057 kb on - strand at 2857.060 kb on + strand at 2857.082 kb on + strand at 2857.086 kb on + strand at 2857.087 kb on - strand at 2857.152 kb on + strand at 2857.152 kb on + strand at 2857.153 kb on - strand at 2857.153 kb on - strand at 2857.174 kb on - strand at 2857.251 kb on + strand at 2857.251 kb on + strand at 2857.251 kb on + strand at 2857.252 kb on - strand at 2857.252 kb on - strand at 2857.255 kb on + strand at 2857.256 kb on - strand at 2857.256 kb on - strand at 2857.566 kb on + strand, within PS417_13075 at 2857.567 kb on - strand, within PS417_13075 at 2857.567 kb on - strand, within PS417_13075 at 2857.804 kb on + strand, within PS417_13080 at 2857.804 kb on + strand, within PS417_13080 at 2858.512 kb on + strand at 2858.513 kb on - strand at 2858.513 kb on - strand at 2858.515 kb on + strand at 2858.516 kb on - strand at 2858.571 kb on + strand at 2858.777 kb on + strand, within PS417_13085 at 2858.778 kb on - strand, within PS417_13085 at 2858.948 kb on + strand, within PS417_13085 at 2859.198 kb on - strand, within PS417_13085 at 2859.279 kb on + strand at 2859.280 kb on - strand at 2859.326 kb on - strand at 2859.362 kb on + strand at 2859.393 kb on + strand at 2859.394 kb on - strand at 2859.394 kb on - strand at 2859.394 kb on - strand at 2859.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 2,857,057 - +1.0 2,857,057 - -1.0 2,857,060 + +0.3 2,857,082 + -0.7 2,857,086 + +1.3 2,857,087 - +1.0 2,857,152 + +0.4 2,857,152 + -0.4 2,857,153 - -0.3 2,857,153 - -0.1 2,857,174 - -0.6 2,857,251 + +0.1 2,857,251 + -0.1 2,857,251 + -0.7 2,857,252 - -0.2 2,857,252 - -0.1 2,857,255 + -0.4 2,857,256 - -0.6 2,857,256 - +0.4 2,857,566 + PS417_13075 0.81 +0.3 2,857,567 - PS417_13075 0.82 +1.4 2,857,567 - PS417_13075 0.82 -1.0 2,857,804 + PS417_13080 0.19 -1.6 2,857,804 + PS417_13080 0.19 +1.1 2,858,512 + -3.4 2,858,513 - -0.2 2,858,513 - +0.8 2,858,515 + +2.4 2,858,516 - +0.1 2,858,571 + -0.7 2,858,777 + PS417_13085 0.19 -0.6 2,858,778 - PS417_13085 0.19 +0.4 2,858,948 + PS417_13085 0.47 -1.6 2,859,198 - PS417_13085 0.87 -1.4 2,859,279 + -0.2 2,859,280 - -0.3 2,859,326 - +0.4 2,859,362 + -0.6 2,859,393 + -0.8 2,859,394 - -0.3 2,859,394 - +0.4 2,859,394 - -1.0 2,859,425 - +0.2
Or see this region's nucleotide sequence