Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12040 and PS417_12045 are separated by 56 nucleotides PS417_12045 and PS417_12050 are separated by 27 nucleotides PS417_12050 and PS417_12055 are separated by 87 nucleotides
PS417_12040: PS417_12040 - dihydroxyacetone kinase, at 2,615,162 to 2,616,163
_12040
PS417_12045: PS417_12045 - iditol 2-dehydrogenase, at 2,616,220 to 2,617,335
_12045
PS417_12050: PS417_12050 - short-chain dehydrogenase, at 2,617,363 to 2,618,118
_12050
PS417_12055: PS417_12055 - xylitol ABC transporter, substrate-binding component (from data) , at 2,618,206 to 2,619,213
_12055
Position (kb)
2616
2617
2618 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2615.278 kb on - strand, within PS417_12040 at 2615.278 kb on - strand at 2615.278 kb on - strand, within PS417_12040 at 2615.278 kb on - strand, within PS417_12040 at 2615.289 kb on + strand, within PS417_12040 at 2615.289 kb on + strand, within PS417_12040 at 2615.290 kb on - strand, within PS417_12040 at 2615.290 kb on - strand at 2615.290 kb on - strand, within PS417_12040 at 2615.290 kb on - strand, within PS417_12040 at 2615.290 kb on - strand, within PS417_12040 at 2615.353 kb on - strand, within PS417_12040 at 2615.353 kb on - strand, within PS417_12040 at 2615.353 kb on - strand, within PS417_12040 at 2615.486 kb on + strand, within PS417_12040 at 2615.516 kb on + strand at 2615.658 kb on + strand, within PS417_12040 at 2615.844 kb on + strand, within PS417_12040 at 2615.845 kb on - strand, within PS417_12040 at 2615.853 kb on + strand, within PS417_12040 at 2615.973 kb on + strand, within PS417_12040 at 2616.249 kb on + strand at 2616.371 kb on + strand, within PS417_12045 at 2616.371 kb on + strand, within PS417_12045 at 2616.372 kb on - strand, within PS417_12045 at 2616.544 kb on - strand, within PS417_12045 at 2616.881 kb on + strand, within PS417_12045 at 2616.881 kb on + strand, within PS417_12045 at 2616.881 kb on + strand, within PS417_12045 at 2617.365 kb on - strand at 2617.436 kb on + strand at 2617.436 kb on + strand at 2617.607 kb on - strand, within PS417_12050 at 2617.646 kb on + strand, within PS417_12050 at 2617.853 kb on + strand, within PS417_12050 at 2617.854 kb on - strand, within PS417_12050 at 2617.900 kb on + strand, within PS417_12050 at 2617.901 kb on - strand, within PS417_12050 at 2618.123 kb on - strand at 2618.232 kb on - strand at 2618.232 kb on - strand at 2618.279 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 2,615,278 - PS417_12040 0.12 -0.0 2,615,278 - +2.3 2,615,278 - PS417_12040 0.12 -0.0 2,615,278 - PS417_12040 0.12 +0.1 2,615,289 + PS417_12040 0.13 -0.1 2,615,289 + PS417_12040 0.13 +1.3 2,615,290 - PS417_12040 0.13 +1.3 2,615,290 - +0.5 2,615,290 - PS417_12040 0.13 -0.2 2,615,290 - PS417_12040 0.13 +0.2 2,615,290 - PS417_12040 0.13 -1.0 2,615,353 - PS417_12040 0.19 -0.8 2,615,353 - PS417_12040 0.19 -0.1 2,615,353 - PS417_12040 0.19 -0.6 2,615,486 + PS417_12040 0.32 +0.2 2,615,516 + +0.2 2,615,658 + PS417_12040 0.50 -0.8 2,615,844 + PS417_12040 0.68 -0.5 2,615,845 - PS417_12040 0.68 +1.2 2,615,853 + PS417_12040 0.69 +0.5 2,615,973 + PS417_12040 0.81 -0.1 2,616,249 + -0.1 2,616,371 + PS417_12045 0.14 -0.3 2,616,371 + PS417_12045 0.14 +0.7 2,616,372 - PS417_12045 0.14 -1.5 2,616,544 - PS417_12045 0.29 -1.8 2,616,881 + PS417_12045 0.59 -0.2 2,616,881 + PS417_12045 0.59 -0.5 2,616,881 + PS417_12045 0.59 -0.4 2,617,365 - -0.9 2,617,436 + -1.2 2,617,436 + -1.4 2,617,607 - PS417_12050 0.32 -0.0 2,617,646 + PS417_12050 0.37 -0.4 2,617,853 + PS417_12050 0.65 -0.5 2,617,854 - PS417_12050 0.65 -1.8 2,617,900 + PS417_12050 0.71 +0.1 2,617,901 - PS417_12050 0.71 -1.2 2,618,123 - +1.2 2,618,232 - +0.3 2,618,232 - +0.1 2,618,279 + -0.2
Or see this region's nucleotide sequence