Strain Fitness in Pseudomonas simiae WCS417 around PS417_01075

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01065 and PS417_01070 overlap by 4 nucleotidesPS417_01070 and PS417_01075 are separated by 53 nucleotidesPS417_01075 and PS417_01080 overlap by 1 nucleotides PS417_01065: PS417_01065 - ABC transporter, at 233,194 to 234,309 _01065 PS417_01070: PS417_01070 - methionine ABC transporter substrate-binding protein, at 234,306 to 235,121 _01070 PS417_01075: PS417_01075 - N5,N10-methylene tetrahydromethanopterin reductase, at 235,175 to 236,527 _01075 PS417_01080: PS417_01080 - acyl-CoA dehydrogenase, at 236,527 to 237,720 _01080 Position (kb) 235 236 237Strain fitness (log2 ratio) -2 -1 0 1at 234.388 kb on + strand, within PS417_01070at 234.389 kb on - strand, within PS417_01070at 234.458 kb on - strand, within PS417_01070at 234.458 kb on - strand, within PS417_01070at 234.458 kb on - strand, within PS417_01070at 234.458 kb on - strand, within PS417_01070at 234.526 kb on + strand, within PS417_01070at 234.527 kb on - strand, within PS417_01070at 234.527 kb on - strand, within PS417_01070at 234.527 kb on - strand, within PS417_01070at 234.527 kb on - strand, within PS417_01070at 234.646 kb on + strand, within PS417_01070at 234.647 kb on - strand, within PS417_01070at 234.651 kb on + strand, within PS417_01070at 234.772 kb on + strand, within PS417_01070at 234.772 kb on + strand, within PS417_01070at 234.773 kb on - strand, within PS417_01070at 234.880 kb on + strand, within PS417_01070at 234.880 kb on + strand, within PS417_01070at 234.957 kb on - strand, within PS417_01070at 235.139 kb on - strandat 235.149 kb on + strandat 235.150 kb on - strandat 235.150 kb on - strandat 235.150 kb on - strandat 235.185 kb on + strandat 235.323 kb on + strand, within PS417_01075at 235.324 kb on - strand, within PS417_01075at 235.434 kb on + strand, within PS417_01075at 235.434 kb on + strand, within PS417_01075at 235.435 kb on - strand, within PS417_01075at 235.533 kb on + strand, within PS417_01075at 235.557 kb on + strand, within PS417_01075at 235.621 kb on - strand, within PS417_01075at 235.621 kb on - strand, within PS417_01075at 235.908 kb on + strand, within PS417_01075at 235.957 kb on - strand, within PS417_01075at 236.020 kb on - strand, within PS417_01075at 236.020 kb on - strand, within PS417_01075at 236.031 kb on - strand, within PS417_01075at 236.031 kb on - strand, within PS417_01075at 236.031 kb on - strand, within PS417_01075at 236.188 kb on - strand, within PS417_01075at 236.199 kb on + strand, within PS417_01075at 236.200 kb on - strand, within PS417_01075at 236.428 kb on - strandat 236.428 kb on - strandat 236.568 kb on - strandat 236.570 kb on + strandat 236.570 kb on + strandat 236.571 kb on - strandat 236.588 kb on + strandat 236.589 kb on - strandat 237.031 kb on - strand, within PS417_01080at 237.031 kb on - strand, within PS417_01080at 237.236 kb on + strand, within PS417_01080at 237.236 kb on + strand, within PS417_01080at 237.236 kb on + strand, within PS417_01080at 237.254 kb on + strand, within PS417_01080at 237.438 kb on - strand, within PS417_01080

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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234,388 + PS417_01070 0.10 -0.5
234,389 - PS417_01070 0.10 -2.3
234,458 - PS417_01070 0.19 +0.5
234,458 - PS417_01070 0.19 -0.1
234,458 - PS417_01070 0.19 +0.0
234,458 - PS417_01070 0.19 -0.5
234,526 + PS417_01070 0.27 -0.4
234,527 - PS417_01070 0.27 -1.3
234,527 - PS417_01070 0.27 +1.3
234,527 - PS417_01070 0.27 -0.4
234,527 - PS417_01070 0.27 +0.4
234,646 + PS417_01070 0.42 -0.0
234,647 - PS417_01070 0.42 -1.3
234,651 + PS417_01070 0.42 -0.8
234,772 + PS417_01070 0.57 -1.1
234,772 + PS417_01070 0.57 -1.1
234,773 - PS417_01070 0.57 +0.5
234,880 + PS417_01070 0.70 +0.1
234,880 + PS417_01070 0.70 +1.3
234,957 - PS417_01070 0.80 -0.4
235,139 - -0.1
235,149 + +0.0
235,150 - +1.6
235,150 - +0.6
235,150 - -0.3
235,185 + -0.0
235,323 + PS417_01075 0.11 +0.1
235,324 - PS417_01075 0.11 +0.7
235,434 + PS417_01075 0.19 -0.2
235,434 + PS417_01075 0.19 -0.5
235,435 - PS417_01075 0.19 -1.3
235,533 + PS417_01075 0.26 -0.8
235,557 + PS417_01075 0.28 -1.7
235,621 - PS417_01075 0.33 -0.1
235,621 - PS417_01075 0.33 -0.4
235,908 + PS417_01075 0.54 +0.6
235,957 - PS417_01075 0.58 -0.8
236,020 - PS417_01075 0.62 +1.3
236,020 - PS417_01075 0.62 -1.0
236,031 - PS417_01075 0.63 -0.2
236,031 - PS417_01075 0.63 +1.5
236,031 - PS417_01075 0.63 +0.3
236,188 - PS417_01075 0.75 -0.3
236,199 + PS417_01075 0.76 +0.7
236,200 - PS417_01075 0.76 +0.2
236,428 - -1.1
236,428 - -0.4
236,568 - -1.0
236,570 + +0.2
236,570 + -0.0
236,571 - -0.1
236,588 + +0.1
236,589 - +0.0
237,031 - PS417_01080 0.42 +0.2
237,031 - PS417_01080 0.42 -1.3
237,236 + PS417_01080 0.59 +0.5
237,236 + PS417_01080 0.59 -1.8
237,236 + PS417_01080 0.59 -1.0
237,254 + PS417_01080 0.61 -0.9
237,438 - PS417_01080 0.76 -0.2

Or see this region's nucleotide sequence