Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10480 and PS417_10485 are separated by 3 nucleotides PS417_10485 and PS417_10490 are separated by 116 nucleotides PS417_10490 and PS417_10495 are separated by 54 nucleotides PS417_10495 and PS417_10500 are separated by 147 nucleotides
PS417_10480: PS417_10480 - glutathione S-transferase, at 2,237,703 to 2,238,401
_10480
PS417_10485: PS417_10485 - phenazine biosynthesis protein PhzF, at 2,238,405 to 2,239,247
_10485
PS417_10490: PS417_10490 - delta-aminolevulinic acid dehydratase, at 2,239,364 to 2,240,338
_10490
PS417_10495: PS417_10495 - lysine transporter LysE, at 2,240,393 to 2,241,007
_10495
PS417_10500: PS417_10500 - lipoprotein, at 2,241,155 to 2,242,240
_10500
Position (kb)
2239
2240
2241 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2238.399 kb on + strand at 2238.399 kb on + strand at 2238.925 kb on + strand, within PS417_10485 at 2238.925 kb on + strand, within PS417_10485 at 2238.925 kb on + strand, within PS417_10485 at 2239.125 kb on + strand, within PS417_10485 at 2239.125 kb on + strand, within PS417_10485 at 2239.126 kb on - strand, within PS417_10485 at 2239.126 kb on - strand, within PS417_10485 at 2239.126 kb on - strand, within PS417_10485 at 2239.321 kb on + strand at 2239.322 kb on - strand at 2239.527 kb on + strand, within PS417_10490 at 2239.527 kb on + strand, within PS417_10490 at 2239.527 kb on + strand, within PS417_10490 at 2239.572 kb on - strand, within PS417_10490 at 2239.852 kb on + strand, within PS417_10490 at 2240.336 kb on + strand at 2240.336 kb on + strand at 2240.336 kb on + strand at 2240.336 kb on + strand at 2240.502 kb on - strand, within PS417_10495 at 2240.520 kb on + strand, within PS417_10495 at 2240.520 kb on + strand, within PS417_10495 at 2240.521 kb on - strand, within PS417_10495 at 2240.521 kb on - strand at 2240.647 kb on + strand, within PS417_10495 at 2240.754 kb on + strand, within PS417_10495 at 2240.755 kb on - strand, within PS417_10495 at 2240.755 kb on - strand at 2240.755 kb on - strand, within PS417_10495 at 2240.763 kb on + strand, within PS417_10495 at 2240.764 kb on - strand, within PS417_10495 at 2240.773 kb on - strand, within PS417_10495 at 2240.787 kb on + strand, within PS417_10495 at 2240.943 kb on - strand, within PS417_10495 at 2240.943 kb on - strand, within PS417_10495 at 2241.026 kb on - strand at 2241.100 kb on - strand at 2241.158 kb on + strand at 2241.158 kb on + strand at 2241.158 kb on + strand at 2241.327 kb on - strand, within PS417_10500 at 2241.327 kb on - strand, within PS417_10500 at 2241.327 kb on - strand, within PS417_10500
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 2,238,399 + -0.3 2,238,399 + -0.8 2,238,925 + PS417_10485 0.62 -0.9 2,238,925 + PS417_10485 0.62 -1.9 2,238,925 + PS417_10485 0.62 -0.5 2,239,125 + PS417_10485 0.85 +0.0 2,239,125 + PS417_10485 0.85 +1.1 2,239,126 - PS417_10485 0.86 +0.0 2,239,126 - PS417_10485 0.86 +0.4 2,239,126 - PS417_10485 0.86 -0.8 2,239,321 + +0.2 2,239,322 - +1.5 2,239,527 + PS417_10490 0.17 +1.1 2,239,527 + PS417_10490 0.17 +0.8 2,239,527 + PS417_10490 0.17 -0.7 2,239,572 - PS417_10490 0.21 +0.2 2,239,852 + PS417_10490 0.50 +1.0 2,240,336 + -1.8 2,240,336 + -0.2 2,240,336 + -0.7 2,240,336 + -0.2 2,240,502 - PS417_10495 0.18 -0.5 2,240,520 + PS417_10495 0.21 +0.5 2,240,520 + PS417_10495 0.21 +0.1 2,240,521 - PS417_10495 0.21 -0.3 2,240,521 - +1.1 2,240,647 + PS417_10495 0.41 +0.5 2,240,754 + PS417_10495 0.59 +0.9 2,240,755 - PS417_10495 0.59 +1.2 2,240,755 - +2.7 2,240,755 - PS417_10495 0.59 +1.5 2,240,763 + PS417_10495 0.60 -0.0 2,240,764 - PS417_10495 0.60 +1.3 2,240,773 - PS417_10495 0.62 -0.8 2,240,787 + PS417_10495 0.64 -1.0 2,240,943 - PS417_10495 0.89 -0.9 2,240,943 - PS417_10495 0.89 -0.7 2,241,026 - -0.9 2,241,100 - -0.5 2,241,158 + -0.9 2,241,158 + +0.2 2,241,158 + +0.1 2,241,327 - PS417_10500 0.16 -1.2 2,241,327 - PS417_10500 0.16 -0.8 2,241,327 - PS417_10500 0.16 +0.2
Or see this region's nucleotide sequence