Strain Fitness in Pseudomonas simiae WCS417 around PS417_07655

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07650 and PS417_07655 are separated by 42 nucleotidesPS417_07655 and PS417_07660 are separated by 46 nucleotidesPS417_07660 and PS417_07665 are separated by 94 nucleotides PS417_07650: PS417_07650 - pyridine nucleotide-disulfide oxidoreductase, at 1,686,850 to 1,688,244 _07650 PS417_07655: PS417_07655 - glycerophosphodiester phosphodiesterase, at 1,688,287 to 1,689,009 _07655 PS417_07660: PS417_07660 - pilus assembly protein PilZ, at 1,689,056 to 1,689,640 _07660 PS417_07665: PS417_07665 - cell division protein FtsX, at 1,689,735 to 1,690,985 _07665 Position (kb) 1688 1689 1690Strain fitness (log2 ratio) -1 0 1at 1688.340 kb on + strandat 1688.345 kb on - strandat 1688.484 kb on - strand, within PS417_07655at 1688.484 kb on - strand, within PS417_07655at 1688.814 kb on - strandat 1688.920 kb on + strand, within PS417_07655at 1688.996 kb on + strandat 1688.996 kb on + strandat 1688.997 kb on - strandat 1688.997 kb on - strandat 1688.997 kb on - strandat 1688.997 kb on - strandat 1689.124 kb on - strand, within PS417_07660at 1689.606 kb on + strandat 1689.606 kb on + strandat 1689.674 kb on + strandat 1689.674 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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1,688,340 + +0.5
1,688,345 - -1.0
1,688,484 - PS417_07655 0.27 +1.6
1,688,484 - PS417_07655 0.27 -1.1
1,688,814 - +0.9
1,688,920 + PS417_07655 0.88 -0.6
1,688,996 + -0.2
1,688,996 + +0.5
1,688,997 - +0.6
1,688,997 - -0.2
1,688,997 - +0.4
1,688,997 - +0.6
1,689,124 - PS417_07660 0.12 -0.5
1,689,606 + +0.7
1,689,606 + -0.6
1,689,674 + +0.2
1,689,674 + +0.8

Or see this region's nucleotide sequence