Strain Fitness in Pseudomonas simiae WCS417 around PS417_07630

Experiment: Fraxetin 3 mM; solid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_07625 and PS417_07630 are separated by 9 nucleotidesPS417_07630 and PS417_07635 are separated by 11 nucleotides PS417_07625: PS417_07625 - helicase, at 1,677,353 to 1,680,046 _07625 PS417_07630: PS417_07630 - hypothetical protein, at 1,680,056 to 1,680,622 _07630 PS417_07635: PS417_07635 - transcription-repair coupling factor, at 1,680,634 to 1,684,083 _07635 Position (kb) 1680 1681Strain fitness (log2 ratio) -3 -2 -1 0 1at 1679.168 kb on - strand, within PS417_07625at 1679.168 kb on - strand, within PS417_07625at 1679.523 kb on + strand, within PS417_07625at 1679.523 kb on + strand, within PS417_07625at 1679.523 kb on + strand, within PS417_07625at 1679.524 kb on - strand, within PS417_07625at 1679.524 kb on - strand, within PS417_07625at 1679.524 kb on - strand, within PS417_07625at 1679.524 kb on - strand, within PS417_07625at 1679.524 kb on - strand, within PS417_07625at 1679.524 kb on - strand, within PS417_07625at 1679.524 kb on - strand, within PS417_07625at 1679.535 kb on + strand, within PS417_07625at 1679.535 kb on + strand, within PS417_07625at 1679.569 kb on - strand, within PS417_07625at 1679.990 kb on - strandat 1680.147 kb on + strand, within PS417_07630at 1680.393 kb on + strand, within PS417_07630at 1680.393 kb on + strand, within PS417_07630at 1680.393 kb on + strand, within PS417_07630at 1680.394 kb on - strand, within PS417_07630at 1680.394 kb on - strand, within PS417_07630at 1680.394 kb on - strand, within PS417_07630at 1680.424 kb on + strand, within PS417_07630at 1680.427 kb on + strand, within PS417_07630at 1680.428 kb on - strand, within PS417_07630at 1680.452 kb on - strand, within PS417_07630at 1680.452 kb on - strand, within PS417_07630at 1680.452 kb on - strand, within PS417_07630at 1680.678 kb on + strandat 1680.678 kb on + strandat 1680.678 kb on + strandat 1680.678 kb on + strandat 1680.678 kb on + strandat 1680.679 kb on - strandat 1680.682 kb on - strandat 1680.682 kb on - strandat 1680.682 kb on - strandat 1680.729 kb on + strandat 1681.152 kb on + strand, within PS417_07635at 1681.154 kb on + strand, within PS417_07635at 1681.155 kb on - strand, within PS417_07635at 1681.155 kb on - strand, within PS417_07635at 1681.247 kb on - strand, within PS417_07635at 1681.340 kb on + strand, within PS417_07635at 1681.340 kb on + strand, within PS417_07635at 1681.346 kb on + strand, within PS417_07635at 1681.347 kb on - strand, within PS417_07635at 1681.362 kb on + strand, within PS417_07635at 1681.362 kb on + strand, within PS417_07635

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
remove
1,679,168 - PS417_07625 0.67 -0.0
1,679,168 - PS417_07625 0.67 -1.6
1,679,523 + PS417_07625 0.81 +1.6
1,679,523 + PS417_07625 0.81 -0.0
1,679,523 + PS417_07625 0.81 -0.9
1,679,524 - PS417_07625 0.81 -2.1
1,679,524 - PS417_07625 0.81 -0.8
1,679,524 - PS417_07625 0.81 -0.4
1,679,524 - PS417_07625 0.81 -0.8
1,679,524 - PS417_07625 0.81 -1.3
1,679,524 - PS417_07625 0.81 -1.0
1,679,524 - PS417_07625 0.81 -0.6
1,679,535 + PS417_07625 0.81 -0.1
1,679,535 + PS417_07625 0.81 +1.2
1,679,569 - PS417_07625 0.82 -0.4
1,679,990 - +0.3
1,680,147 + PS417_07630 0.16 -0.7
1,680,393 + PS417_07630 0.59 -0.1
1,680,393 + PS417_07630 0.59 -0.7
1,680,393 + PS417_07630 0.59 -0.8
1,680,394 - PS417_07630 0.60 +0.6
1,680,394 - PS417_07630 0.60 +0.0
1,680,394 - PS417_07630 0.60 +0.2
1,680,424 + PS417_07630 0.65 -0.9
1,680,427 + PS417_07630 0.65 -0.6
1,680,428 - PS417_07630 0.66 +0.9
1,680,452 - PS417_07630 0.70 -1.1
1,680,452 - PS417_07630 0.70 +0.1
1,680,452 - PS417_07630 0.70 -0.6
1,680,678 + -2.6
1,680,678 + -0.2
1,680,678 + -0.2
1,680,678 + -1.2
1,680,678 + -1.1
1,680,679 - +1.4
1,680,682 - +1.0
1,680,682 - +0.0
1,680,682 - -1.4
1,680,729 + -0.9
1,681,152 + PS417_07635 0.15 -2.9
1,681,154 + PS417_07635 0.15 +0.3
1,681,155 - PS417_07635 0.15 +0.5
1,681,155 - PS417_07635 0.15 +0.4
1,681,247 - PS417_07635 0.18 -0.9
1,681,340 + PS417_07635 0.20 +1.0
1,681,340 + PS417_07635 0.20 -2.9
1,681,346 + PS417_07635 0.21 -0.4
1,681,347 - PS417_07635 0.21 -0.4
1,681,362 + PS417_07635 0.21 -0.7
1,681,362 + PS417_07635 0.21 +0.1

Or see this region's nucleotide sequence