Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05935 and PS417_05940 are separated by 201 nucleotides PS417_05940 and PS417_05945 are separated by 72 nucleotides
PS417_05935: PS417_05935 - polyamine ABC transporter ATP-binding protein, at 1,319,114 to 1,320,148
_05935
PS417_05940: PS417_05940 - spermidine/putrescine ABC transporter substrate-binding protein, at 1,320,350 to 1,321,501
_05940
PS417_05945: PS417_05945 - gamma-aminobutyraldehyde dehydrogenase, at 1,321,574 to 1,323,031
_05945
Position (kb)
1320
1321
1322 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1319.480 kb on - strand, within PS417_05935 at 1319.480 kb on - strand, within PS417_05935 at 1319.482 kb on - strand, within PS417_05935 at 1319.482 kb on - strand, within PS417_05935 at 1319.584 kb on + strand, within PS417_05935 at 1319.816 kb on - strand, within PS417_05935 at 1319.906 kb on + strand, within PS417_05935 at 1319.906 kb on + strand, within PS417_05935 at 1319.906 kb on + strand, within PS417_05935 at 1319.907 kb on - strand, within PS417_05935 at 1319.907 kb on - strand, within PS417_05935 at 1319.907 kb on - strand, within PS417_05935 at 1319.907 kb on - strand, within PS417_05935 at 1320.285 kb on + strand at 1320.286 kb on - strand at 1320.375 kb on + strand at 1320.376 kb on - strand at 1320.597 kb on + strand, within PS417_05940 at 1320.597 kb on + strand, within PS417_05940 at 1320.667 kb on + strand, within PS417_05940 at 1320.865 kb on - strand, within PS417_05940 at 1320.907 kb on - strand, within PS417_05940 at 1320.927 kb on + strand, within PS417_05940 at 1320.928 kb on - strand, within PS417_05940 at 1320.943 kb on - strand, within PS417_05940 at 1321.045 kb on - strand, within PS417_05940 at 1321.045 kb on - strand, within PS417_05940 at 1321.084 kb on - strand, within PS417_05940 at 1321.084 kb on - strand, within PS417_05940 at 1321.519 kb on + strand at 1321.523 kb on + strand at 1321.523 kb on + strand at 1321.524 kb on - strand at 1321.524 kb on - strand at 1321.563 kb on + strand at 1321.907 kb on - strand, within PS417_05945 at 1321.933 kb on - strand, within PS417_05945 at 1321.935 kb on + strand at 1321.935 kb on + strand, within PS417_05945 at 1321.936 kb on - strand, within PS417_05945 at 1321.936 kb on - strand, within PS417_05945 at 1321.936 kb on - strand, within PS417_05945 at 1322.151 kb on + strand, within PS417_05945 at 1322.190 kb on + strand, within PS417_05945 at 1322.191 kb on - strand, within PS417_05945
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 1,319,480 - PS417_05935 0.35 -1.3 1,319,480 - PS417_05935 0.35 +0.4 1,319,482 - PS417_05935 0.36 -1.6 1,319,482 - PS417_05935 0.36 +1.4 1,319,584 + PS417_05935 0.45 -0.2 1,319,816 - PS417_05935 0.68 -0.8 1,319,906 + PS417_05935 0.77 +1.1 1,319,906 + PS417_05935 0.77 +0.4 1,319,906 + PS417_05935 0.77 -0.5 1,319,907 - PS417_05935 0.77 +0.7 1,319,907 - PS417_05935 0.77 -0.2 1,319,907 - PS417_05935 0.77 +0.6 1,319,907 - PS417_05935 0.77 -2.3 1,320,285 + -1.8 1,320,286 - -0.3 1,320,375 + -0.2 1,320,376 - +0.2 1,320,597 + PS417_05940 0.21 +0.1 1,320,597 + PS417_05940 0.21 +0.2 1,320,667 + PS417_05940 0.28 +0.0 1,320,865 - PS417_05940 0.45 +0.8 1,320,907 - PS417_05940 0.48 +1.4 1,320,927 + PS417_05940 0.50 +0.4 1,320,928 - PS417_05940 0.50 +2.0 1,320,943 - PS417_05940 0.51 +2.0 1,321,045 - PS417_05940 0.60 -1.2 1,321,045 - PS417_05940 0.60 -0.1 1,321,084 - PS417_05940 0.64 +0.5 1,321,084 - PS417_05940 0.64 -0.4 1,321,519 + +0.9 1,321,523 + -0.4 1,321,523 + -0.2 1,321,524 - -0.1 1,321,524 - +0.1 1,321,563 + -0.8 1,321,907 - PS417_05945 0.23 +1.7 1,321,933 - PS417_05945 0.25 -0.2 1,321,935 + +1.7 1,321,935 + PS417_05945 0.25 -0.7 1,321,936 - PS417_05945 0.25 -0.0 1,321,936 - PS417_05945 0.25 +0.2 1,321,936 - PS417_05945 0.25 -0.3 1,322,151 + PS417_05945 0.40 -0.7 1,322,190 + PS417_05945 0.42 -2.0 1,322,191 - PS417_05945 0.42 -1.1
Or see this region's nucleotide sequence