Strain Fitness in Pseudomonas simiae WCS417 around PS417_00430

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00420 and PS417_00425 are separated by 168 nucleotidesPS417_00425 and PS417_00430 are separated by 10 nucleotidesPS417_00430 and PS417_00435 overlap by 4 nucleotides PS417_00420: PS417_00420 - cytochrome C, at 82,196 to 82,822 _00420 PS417_00425: PS417_00425 - thiol:disulfide interchange protein, at 82,991 to 83,626 _00425 PS417_00430: PS417_00430 - endonuclease, at 83,637 to 84,515 _00430 PS417_00435: PS417_00435 - DeoR faimly transcriptional regulator, at 84,512 to 86,566 _00435 Position (kb) 83 84 85Strain fitness (log2 ratio) -2 -1 0 1at 82.821 kb on - strandat 82.832 kb on - strandat 82.849 kb on - strandat 82.868 kb on - strandat 82.971 kb on + strandat 82.985 kb on + strandat 83.624 kb on + strandat 83.790 kb on + strand, within PS417_00430at 83.791 kb on - strand, within PS417_00430at 83.791 kb on - strand, within PS417_00430at 83.791 kb on - strand, within PS417_00430at 84.189 kb on + strand, within PS417_00430at 84.190 kb on - strand, within PS417_00430at 84.190 kb on - strand, within PS417_00430at 84.190 kb on - strand, within PS417_00430at 84.213 kb on + strand, within PS417_00430at 84.214 kb on - strand, within PS417_00430at 84.357 kb on - strand, within PS417_00430at 84.357 kb on - strand, within PS417_00430at 84.371 kb on + strand, within PS417_00430at 84.551 kb on - strandat 84.551 kb on - strandat 84.710 kb on - strandat 85.175 kb on - strand, within PS417_00435at 85.493 kb on + strand, within PS417_00435at 85.493 kb on + strand, within PS417_00435at 85.493 kb on + strand, within PS417_00435at 85.494 kb on - strand, within PS417_00435at 85.494 kb on - strand, within PS417_00435at 85.494 kb on - strand, within PS417_00435at 85.494 kb on - strand, within PS417_00435at 85.494 kb on - strand, within PS417_00435

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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82,821 - -0.1
82,832 - +0.5
82,849 - -0.7
82,868 - -0.0
82,971 + +0.4
82,985 + +1.1
83,624 + -0.8
83,790 + PS417_00430 0.17 -0.3
83,791 - PS417_00430 0.18 -0.7
83,791 - PS417_00430 0.18 -0.0
83,791 - PS417_00430 0.18 -0.4
84,189 + PS417_00430 0.63 -0.4
84,190 - PS417_00430 0.63 -0.6
84,190 - PS417_00430 0.63 +0.4
84,190 - PS417_00430 0.63 +0.5
84,213 + PS417_00430 0.66 -0.4
84,214 - PS417_00430 0.66 -0.2
84,357 - PS417_00430 0.82 -0.9
84,357 - PS417_00430 0.82 -2.1
84,371 + PS417_00430 0.84 +1.5
84,551 - -0.2
84,551 - -0.2
84,710 - -0.8
85,175 - PS417_00435 0.32 -0.3
85,493 + PS417_00435 0.48 -0.5
85,493 + PS417_00435 0.48 +0.1
85,493 + PS417_00435 0.48 -0.1
85,494 - PS417_00435 0.48 -0.5
85,494 - PS417_00435 0.48 +1.0
85,494 - PS417_00435 0.48 +0.6
85,494 - PS417_00435 0.48 +0.0
85,494 - PS417_00435 0.48 -1.2

Or see this region's nucleotide sequence