Strain Fitness in Pseudomonas simiae WCS417 around PS417_27935

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27930 and PS417_27935 are separated by 18 nucleotidesPS417_27935 and PS417_27940 are separated by 57 nucleotides PS417_27930: PS417_27930 - type VI secretion protein, at 6,024,797 to 6,026,131 _27930 PS417_27935: PS417_27935 - type VI secretion protein, at 6,026,150 to 6,026,659 _27935 PS417_27940: PS417_27940 - type VI secretion protein, at 6,026,717 to 6,028,051 _27940 Position (kb) 6026 6027Strain fitness (log2 ratio) -1 0 1 2at 6025.152 kb on + strand, within PS417_27930at 6025.575 kb on + strand, within PS417_27930at 6025.575 kb on + strand, within PS417_27930at 6025.576 kb on - strand, within PS417_27930at 6025.576 kb on - strand, within PS417_27930at 6025.590 kb on - strand, within PS417_27930at 6025.761 kb on + strand, within PS417_27930at 6025.836 kb on + strand, within PS417_27930at 6026.229 kb on + strand, within PS417_27935at 6026.678 kb on + strandat 6026.682 kb on + strandat 6026.682 kb on + strandat 6026.682 kb on + strandat 6026.682 kb on + strandat 6026.682 kb on + strandat 6026.682 kb on + strandat 6026.682 kb on + strandat 6026.682 kb on + strandat 6026.682 kb on + strandat 6026.682 kb on + strandat 6026.683 kb on - strandat 6026.683 kb on - strandat 6026.683 kb on - strandat 6026.683 kb on - strandat 6026.683 kb on - strandat 6026.683 kb on - strandat 6026.809 kb on + strandat 6026.817 kb on + strandat 6027.202 kb on - strand, within PS417_27940

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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6,025,152 + PS417_27930 0.27 +0.6
6,025,575 + PS417_27930 0.58 +0.1
6,025,575 + PS417_27930 0.58 +0.1
6,025,576 - PS417_27930 0.58 -0.3
6,025,576 - PS417_27930 0.58 -1.7
6,025,590 - PS417_27930 0.59 +1.1
6,025,761 + PS417_27930 0.72 -0.0
6,025,836 + PS417_27930 0.78 -0.1
6,026,229 + PS417_27935 0.15 -1.1
6,026,678 + +2.2
6,026,682 + +1.0
6,026,682 + +0.1
6,026,682 + +1.1
6,026,682 + +1.1
6,026,682 + -0.2
6,026,682 + -1.3
6,026,682 + -0.0
6,026,682 + +1.3
6,026,682 + -0.2
6,026,682 + +0.3
6,026,683 - +1.1
6,026,683 - -0.8
6,026,683 - +0.1
6,026,683 - -0.9
6,026,683 - -0.1
6,026,683 - -0.7
6,026,809 + -1.4
6,026,817 + +0.4
6,027,202 - PS417_27940 0.36 +1.1

Or see this region's nucleotide sequence