Strain Fitness in Pseudomonas simiae WCS417 around PS417_27460

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27450 and PS417_27455 are separated by 116 nucleotidesPS417_27455 and PS417_27460 are separated by 47 nucleotidesPS417_27460 and PS417_27465 are separated by 1 nucleotides PS417_27450: PS417_27450 - membrane protein, at 5,924,418 to 5,925,653 _27450 PS417_27455: PS417_27455 - isoprenoid biosynthesis protein, at 5,925,770 to 5,926,435 _27455 PS417_27460: PS417_27460 - hypothetical protein, at 5,926,483 to 5,926,938 _27460 PS417_27465: PS417_27465 - cystathionine gamma-synthase, at 5,926,940 to 5,928,835 _27465 Position (kb) 5926 5927Strain fitness (log2 ratio) -2 -1 0 1 2at 5925.542 kb on + strandat 5925.543 kb on - strandat 5925.565 kb on + strandat 5925.604 kb on - strandat 5925.604 kb on - strandat 5925.668 kb on + strandat 5925.668 kb on + strandat 5925.668 kb on + strandat 5925.688 kb on + strandat 5925.688 kb on + strandat 5925.689 kb on - strandat 5925.689 kb on - strandat 5925.731 kb on + strandat 5925.743 kb on - strandat 5925.812 kb on + strandat 5925.812 kb on + strandat 5925.960 kb on + strand, within PS417_27455at 5925.961 kb on - strand, within PS417_27455at 5926.177 kb on + strand, within PS417_27455at 5926.178 kb on - strand, within PS417_27455at 5926.178 kb on - strand, within PS417_27455at 5926.205 kb on + strand, within PS417_27455at 5926.205 kb on + strand, within PS417_27455at 5926.205 kb on + strand, within PS417_27455at 5926.206 kb on - strand, within PS417_27455at 5926.206 kb on - strand, within PS417_27455at 5926.206 kb on - strand, within PS417_27455at 5926.346 kb on + strand, within PS417_27455at 5926.346 kb on + strand, within PS417_27455at 5926.346 kb on + strand, within PS417_27455at 5926.347 kb on - strand, within PS417_27455at 5926.347 kb on - strand, within PS417_27455at 5926.347 kb on - strand, within PS417_27455at 5926.347 kb on - strand, within PS417_27455at 5926.348 kb on + strand, within PS417_27455at 5926.348 kb on + strand, within PS417_27455at 5926.503 kb on + strandat 5926.753 kb on + strand, within PS417_27460at 5926.754 kb on - strand, within PS417_27460at 5926.760 kb on + strand, within PS417_27460at 5926.760 kb on + strand, within PS417_27460at 5926.761 kb on - strand, within PS417_27460at 5926.761 kb on - strand, within PS417_27460at 5926.792 kb on + strand, within PS417_27460at 5926.983 kb on + strandat 5926.983 kb on + strandat 5926.984 kb on - strandat 5926.984 kb on - strandat 5927.032 kb on - strandat 5927.032 kb on - strandat 5927.135 kb on + strand, within PS417_27465at 5927.136 kb on - strand, within PS417_27465at 5927.393 kb on + strand, within PS417_27465at 5927.412 kb on + strand, within PS417_27465at 5927.412 kb on + strand, within PS417_27465at 5927.413 kb on - strand, within PS417_27465at 5927.413 kb on - strand, within PS417_27465at 5927.413 kb on - strand, within PS417_27465at 5927.542 kb on - strand, within PS417_27465at 5927.712 kb on + strand, within PS417_27465at 5927.712 kb on + strand, within PS417_27465at 5927.712 kb on + strand, within PS417_27465at 5927.713 kb on - strand, within PS417_27465at 5927.713 kb on - strand, within PS417_27465at 5927.713 kb on - strand, within PS417_27465at 5927.713 kb on - strand, within PS417_27465at 5927.925 kb on + strand, within PS417_27465at 5927.926 kb on - strand, within PS417_27465at 5927.926 kb on - strand, within PS417_27465

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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5,925,542 + +0.6
5,925,543 - +1.4
5,925,565 + -0.4
5,925,604 - +1.3
5,925,604 - +0.8
5,925,668 + -0.4
5,925,668 + -1.1
5,925,668 + -0.0
5,925,688 + +0.1
5,925,688 + +0.4
5,925,689 - -0.2
5,925,689 - -0.1
5,925,731 + -0.7
5,925,743 - -0.0
5,925,812 + +1.0
5,925,812 + +0.4
5,925,960 + PS417_27455 0.29 +0.2
5,925,961 - PS417_27455 0.29 -0.2
5,926,177 + PS417_27455 0.61 -0.1
5,926,178 - PS417_27455 0.61 -2.1
5,926,178 - PS417_27455 0.61 +0.6
5,926,205 + PS417_27455 0.65 +1.0
5,926,205 + PS417_27455 0.65 +0.4
5,926,205 + PS417_27455 0.65 -0.3
5,926,206 - PS417_27455 0.65 -0.3
5,926,206 - PS417_27455 0.65 -0.5
5,926,206 - PS417_27455 0.65 -0.1
5,926,346 + PS417_27455 0.86 -0.2
5,926,346 + PS417_27455 0.86 -0.8
5,926,346 + PS417_27455 0.86 -0.8
5,926,347 - PS417_27455 0.87 -0.5
5,926,347 - PS417_27455 0.87 +0.7
5,926,347 - PS417_27455 0.87 +0.4
5,926,347 - PS417_27455 0.87 -0.5
5,926,348 + PS417_27455 0.87 +0.4
5,926,348 + PS417_27455 0.87 +2.2
5,926,503 + +1.2
5,926,753 + PS417_27460 0.59 +0.0
5,926,754 - PS417_27460 0.59 +0.2
5,926,760 + PS417_27460 0.61 -0.6
5,926,760 + PS417_27460 0.61 -0.9
5,926,761 - PS417_27460 0.61 -0.5
5,926,761 - PS417_27460 0.61 -1.7
5,926,792 + PS417_27460 0.68 +0.4
5,926,983 + -0.6
5,926,983 + -0.9
5,926,984 - -0.9
5,926,984 - +0.5
5,927,032 - +0.8
5,927,032 - -0.1
5,927,135 + PS417_27465 0.10 -0.5
5,927,136 - PS417_27465 0.10 -0.7
5,927,393 + PS417_27465 0.24 -0.2
5,927,412 + PS417_27465 0.25 -0.7
5,927,412 + PS417_27465 0.25 -1.0
5,927,413 - PS417_27465 0.25 -0.3
5,927,413 - PS417_27465 0.25 -1.4
5,927,413 - PS417_27465 0.25 -0.1
5,927,542 - PS417_27465 0.32 -0.4
5,927,712 + PS417_27465 0.41 +0.2
5,927,712 + PS417_27465 0.41 +1.2
5,927,712 + PS417_27465 0.41 -0.3
5,927,713 - PS417_27465 0.41 +0.8
5,927,713 - PS417_27465 0.41 -0.4
5,927,713 - PS417_27465 0.41 +0.3
5,927,713 - PS417_27465 0.41 -0.6
5,927,925 + PS417_27465 0.52 -0.7
5,927,926 - PS417_27465 0.52 -0.7
5,927,926 - PS417_27465 0.52 +0.4

Or see this region's nucleotide sequence