Strain Fitness in Pseudomonas simiae WCS417 around PS417_26500

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26495 and PS417_26500 are separated by 99 nucleotidesPS417_26500 and PS417_26505 are separated by 326 nucleotides PS417_26495: PS417_26495 - type III secretion system effector protein exou, at 5,729,201 to 5,731,132 _26495 PS417_26500: PS417_26500 - thioesterase, at 5,731,232 to 5,731,636 _26500 PS417_26505: PS417_26505 - adenosylhomocysteinase, at 5,731,963 to 5,733,372 _26505 Position (kb) 5731 5732Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5730.448 kb on + strand, within PS417_26495at 5730.448 kb on + strand, within PS417_26495at 5730.449 kb on - strand, within PS417_26495at 5730.481 kb on + strand, within PS417_26495at 5730.482 kb on - strand, within PS417_26495at 5730.869 kb on - strandat 5730.981 kb on - strandat 5731.233 kb on + strandat 5731.246 kb on + strandat 5731.273 kb on - strand, within PS417_26500at 5731.372 kb on + strand, within PS417_26500at 5731.373 kb on - strand, within PS417_26500at 5731.373 kb on - strand, within PS417_26500at 5731.488 kb on + strand, within PS417_26500at 5731.488 kb on + strand, within PS417_26500at 5731.488 kb on + strand, within PS417_26500at 5731.489 kb on - strand, within PS417_26500at 5731.489 kb on - strand, within PS417_26500at 5731.489 kb on - strand, within PS417_26500at 5731.610 kb on + strandat 5731.700 kb on + strandat 5731.710 kb on + strandat 5731.710 kb on + strandat 5731.711 kb on - strandat 5731.711 kb on - strandat 5731.711 kb on - strandat 5731.714 kb on + strandat 5731.714 kb on + strandat 5731.715 kb on - strandat 5731.715 kb on - strandat 5731.715 kb on - strandat 5731.739 kb on - strandat 5731.779 kb on + strandat 5731.946 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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5,730,448 + PS417_26495 0.65 -0.2
5,730,448 + PS417_26495 0.65 -0.4
5,730,449 - PS417_26495 0.65 +0.0
5,730,481 + PS417_26495 0.66 +0.5
5,730,482 - PS417_26495 0.66 -0.0
5,730,869 - +1.2
5,730,981 - +0.2
5,731,233 + -0.8
5,731,246 + +1.3
5,731,273 - PS417_26500 0.10 -1.5
5,731,372 + PS417_26500 0.35 -1.3
5,731,373 - PS417_26500 0.35 -1.0
5,731,373 - PS417_26500 0.35 -1.5
5,731,488 + PS417_26500 0.63 -1.6
5,731,488 + PS417_26500 0.63 -3.0
5,731,488 + PS417_26500 0.63 -3.2
5,731,489 - PS417_26500 0.63 -0.3
5,731,489 - PS417_26500 0.63 -3.8
5,731,489 - PS417_26500 0.63 -0.5
5,731,610 + -2.5
5,731,700 + -1.5
5,731,710 + -0.2
5,731,710 + +0.1
5,731,711 - -0.7
5,731,711 - -0.0
5,731,711 - +0.3
5,731,714 + -1.0
5,731,714 + -3.1
5,731,715 - +0.7
5,731,715 - -0.3
5,731,715 - +0.2
5,731,739 - -0.3
5,731,779 + -0.1
5,731,946 - +1.2

Or see this region's nucleotide sequence