Experiment: Fraxetin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24595 and PS417_24600 are separated by 277 nucleotides PS417_24600 and PS417_24605 are separated by 18 nucleotides PS417_24605 and PS417_24610 are separated by 17 nucleotides
PS417_24595: PS417_24595 - histidine kinase, at 5,336,534 to 5,338,924
_24595
PS417_24600: PS417_24600 - hydrogenase, at 5,339,202 to 5,339,999
_24600
PS417_24605: PS417_24605 - thiamine-phosphate pyrophosphorylase, at 5,340,018 to 5,340,641
_24605
PS417_24610: PS417_24610 - glutamate-1-semialdehyde 2,1-aminomutase, at 5,340,659 to 5,341,942
_24610
Position (kb)
5339
5340 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 5338.218 kb on + strand, within PS417_24595 at 5338.218 kb on + strand, within PS417_24595 at 5338.251 kb on + strand, within PS417_24595 at 5338.251 kb on + strand, within PS417_24595 at 5338.251 kb on + strand at 5338.252 kb on - strand, within PS417_24595 at 5338.252 kb on - strand, within PS417_24595 at 5338.252 kb on - strand, within PS417_24595 at 5338.252 kb on - strand, within PS417_24595 at 5338.273 kb on - strand, within PS417_24595 at 5338.273 kb on - strand, within PS417_24595 at 5338.281 kb on + strand, within PS417_24595 at 5338.281 kb on + strand, within PS417_24595 at 5338.281 kb on + strand, within PS417_24595 at 5338.281 kb on + strand, within PS417_24595 at 5338.281 kb on + strand, within PS417_24595 at 5338.281 kb on + strand, within PS417_24595 at 5338.281 kb on + strand, within PS417_24595 at 5338.281 kb on + strand, within PS417_24595 at 5338.281 kb on + strand, within PS417_24595 at 5338.281 kb on + strand, within PS417_24595 at 5338.281 kb on + strand, within PS417_24595 at 5338.282 kb on - strand, within PS417_24595 at 5338.282 kb on - strand, within PS417_24595 at 5338.282 kb on - strand, within PS417_24595 at 5338.282 kb on - strand, within PS417_24595 at 5338.282 kb on - strand, within PS417_24595 at 5338.282 kb on - strand, within PS417_24595 at 5338.282 kb on - strand, within PS417_24595 at 5338.284 kb on + strand, within PS417_24595 at 5338.291 kb on - strand, within PS417_24595 at 5338.291 kb on - strand, within PS417_24595 at 5338.314 kb on + strand, within PS417_24595 at 5338.314 kb on + strand, within PS417_24595 at 5338.314 kb on + strand, within PS417_24595 at 5338.314 kb on + strand, within PS417_24595 at 5338.314 kb on + strand, within PS417_24595 at 5338.314 kb on + strand, within PS417_24595 at 5338.315 kb on - strand, within PS417_24595 at 5338.315 kb on - strand, within PS417_24595 at 5338.315 kb on - strand, within PS417_24595 at 5338.315 kb on - strand, within PS417_24595 at 5338.357 kb on - strand, within PS417_24595 at 5338.357 kb on - strand, within PS417_24595 at 5338.357 kb on - strand, within PS417_24595 at 5338.374 kb on + strand, within PS417_24595 at 5338.374 kb on + strand, within PS417_24595 at 5338.375 kb on - strand, within PS417_24595 at 5338.375 kb on - strand, within PS417_24595 at 5338.375 kb on - strand, within PS417_24595 at 5338.375 kb on - strand, within PS417_24595 at 5338.464 kb on + strand, within PS417_24595 at 5338.509 kb on + strand, within PS417_24595 at 5338.599 kb on + strand, within PS417_24595 at 5338.600 kb on - strand, within PS417_24595 at 5338.600 kb on - strand, within PS417_24595 at 5338.677 kb on + strand, within PS417_24595 at 5338.678 kb on - strand, within PS417_24595 at 5338.924 kb on + strand at 5338.924 kb on + strand at 5338.987 kb on + strand at 5338.988 kb on - strand at 5338.988 kb on - strand at 5338.999 kb on - strand at 5339.023 kb on + strand at 5339.023 kb on + strand at 5339.023 kb on + strand at 5339.024 kb on - strand at 5339.029 kb on - strand at 5339.029 kb on - strand at 5339.029 kb on - strand at 5339.078 kb on + strand at 5339.207 kb on + strand at 5339.208 kb on - strand at 5339.211 kb on + strand at 5339.211 kb on + strand at 5339.211 kb on + strand at 5339.211 kb on + strand at 5339.212 kb on - strand at 5339.212 kb on - strand at 5339.212 kb on - strand at 5339.212 kb on - strand at 5339.374 kb on + strand, within PS417_24600 at 5339.703 kb on + strand, within PS417_24600 at 5339.703 kb on + strand, within PS417_24600 at 5339.703 kb on + strand, within PS417_24600 at 5339.820 kb on + strand, within PS417_24600 at 5339.913 kb on + strand, within PS417_24600 at 5339.913 kb on + strand, within PS417_24600 at 5339.913 kb on + strand, within PS417_24600 at 5339.914 kb on - strand, within PS417_24600 at 5340.003 kb on + strand at 5340.003 kb on + strand at 5340.081 kb on + strand, within PS417_24605 at 5340.197 kb on + strand, within PS417_24605 at 5340.384 kb on + strand, within PS417_24605 at 5340.384 kb on + strand, within PS417_24605 at 5340.384 kb on + strand, within PS417_24605
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress remove 5,338,218 + PS417_24595 0.70 -1.6 5,338,218 + PS417_24595 0.70 -0.8 5,338,251 + PS417_24595 0.72 -0.6 5,338,251 + PS417_24595 0.72 -0.0 5,338,251 + -0.3 5,338,252 - PS417_24595 0.72 -0.7 5,338,252 - PS417_24595 0.72 -0.5 5,338,252 - PS417_24595 0.72 -1.4 5,338,252 - PS417_24595 0.72 +1.2 5,338,273 - PS417_24595 0.73 -0.5 5,338,273 - PS417_24595 0.73 -0.8 5,338,281 + PS417_24595 0.73 +0.1 5,338,281 + PS417_24595 0.73 +0.7 5,338,281 + PS417_24595 0.73 -0.8 5,338,281 + PS417_24595 0.73 -1.2 5,338,281 + PS417_24595 0.73 -0.3 5,338,281 + PS417_24595 0.73 -0.8 5,338,281 + PS417_24595 0.73 +0.5 5,338,281 + PS417_24595 0.73 +0.0 5,338,281 + PS417_24595 0.73 -0.3 5,338,281 + PS417_24595 0.73 -0.2 5,338,281 + PS417_24595 0.73 -0.8 5,338,282 - PS417_24595 0.73 -0.5 5,338,282 - PS417_24595 0.73 -0.3 5,338,282 - PS417_24595 0.73 +3.0 5,338,282 - PS417_24595 0.73 -0.1 5,338,282 - PS417_24595 0.73 +0.4 5,338,282 - PS417_24595 0.73 -1.1 5,338,282 - PS417_24595 0.73 +0.7 5,338,284 + PS417_24595 0.73 -0.6 5,338,291 - PS417_24595 0.73 -0.0 5,338,291 - PS417_24595 0.73 +0.4 5,338,314 + PS417_24595 0.74 -0.0 5,338,314 + PS417_24595 0.74 -0.3 5,338,314 + PS417_24595 0.74 -0.4 5,338,314 + PS417_24595 0.74 -0.4 5,338,314 + PS417_24595 0.74 -0.3 5,338,314 + PS417_24595 0.74 -0.7 5,338,315 - PS417_24595 0.74 +0.7 5,338,315 - PS417_24595 0.74 +1.2 5,338,315 - PS417_24595 0.74 +0.1 5,338,315 - PS417_24595 0.74 -1.4 5,338,357 - PS417_24595 0.76 -0.4 5,338,357 - PS417_24595 0.76 -0.8 5,338,357 - PS417_24595 0.76 +1.4 5,338,374 + PS417_24595 0.77 +0.3 5,338,374 + PS417_24595 0.77 -0.2 5,338,375 - PS417_24595 0.77 -0.4 5,338,375 - PS417_24595 0.77 -0.8 5,338,375 - PS417_24595 0.77 -1.3 5,338,375 - PS417_24595 0.77 +0.1 5,338,464 + PS417_24595 0.81 -0.1 5,338,509 + PS417_24595 0.83 -0.7 5,338,599 + PS417_24595 0.86 -1.0 5,338,600 - PS417_24595 0.86 -0.9 5,338,600 - PS417_24595 0.86 +0.2 5,338,677 + PS417_24595 0.90 -0.4 5,338,678 - PS417_24595 0.90 -1.4 5,338,924 + -0.1 5,338,924 + -0.3 5,338,987 + -0.7 5,338,988 - -0.8 5,338,988 - +0.5 5,338,999 - -0.3 5,339,023 + +0.4 5,339,023 + -0.2 5,339,023 + -0.4 5,339,024 - +0.2 5,339,029 - +0.7 5,339,029 - -0.8 5,339,029 - +0.2 5,339,078 + -0.2 5,339,207 + +0.4 5,339,208 - -0.7 5,339,211 + -2.5 5,339,211 + -1.4 5,339,211 + -0.5 5,339,211 + +0.2 5,339,212 - +2.0 5,339,212 - +0.5 5,339,212 - +0.5 5,339,212 - +4.0 5,339,374 + PS417_24600 0.22 -1.6 5,339,703 + PS417_24600 0.63 -1.9 5,339,703 + PS417_24600 0.63 -0.6 5,339,703 + PS417_24600 0.63 -2.7 5,339,820 + PS417_24600 0.77 -0.2 5,339,913 + PS417_24600 0.89 -1.8 5,339,913 + PS417_24600 0.89 -0.8 5,339,913 + PS417_24600 0.89 +0.1 5,339,914 - PS417_24600 0.89 -0.3 5,340,003 + +2.0 5,340,003 + -0.6 5,340,081 + PS417_24605 0.10 -1.6 5,340,197 + PS417_24605 0.29 +0.3 5,340,384 + PS417_24605 0.59 -1.8 5,340,384 + PS417_24605 0.59 -1.1 5,340,384 + PS417_24605 0.59 -2.5
Or see this region's nucleotide sequence