Experiment: Fraxetin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08730 and PS417_08735 are separated by 16 nucleotides PS417_08735 and PS417_08740 are separated by 278 nucleotides PS417_08740 and PS417_08745 are separated by 24 nucleotides PS417_08745 and PS417_08750 are separated by 319 nucleotides
PS417_08730: PS417_08730 - cytochrome C, at 1,901,072 to 1,902,259
_08730
PS417_08735: PS417_08735 - hypothetical protein, at 1,902,276 to 1,902,671
_08735
PS417_08740: PS417_08740 - ribose-phosphate pyrophosphokinase, at 1,902,950 to 1,903,522
_08740
PS417_08745: PS417_08745 - hypothetical protein, at 1,903,547 to 1,904,023
_08745
PS417_08750: PS417_08750 - hypothetical protein, at 1,904,343 to 1,904,531
_08750
Position (kb)
1902
1903
1904 Strain fitness (log2 ratio)
-1
0
1
2 at 1901.988 kb on + strand, within PS417_08730 at 1901.989 kb on - strand, within PS417_08730 at 1902.254 kb on - strand at 1902.516 kb on + strand, within PS417_08735 at 1902.516 kb on + strand, within PS417_08735 at 1902.516 kb on + strand, within PS417_08735 at 1902.516 kb on + strand, within PS417_08735 at 1902.547 kb on - strand, within PS417_08735 at 1902.547 kb on - strand, within PS417_08735 at 1902.561 kb on + strand, within PS417_08735 at 1902.561 kb on + strand, within PS417_08735 at 1902.562 kb on - strand, within PS417_08735 at 1902.562 kb on - strand, within PS417_08735 at 1902.843 kb on - strand at 1902.843 kb on - strand at 1902.856 kb on + strand at 1902.857 kb on - strand at 1902.968 kb on + strand at 1903.323 kb on + strand, within PS417_08740 at 1903.324 kb on - strand, within PS417_08740 at 1903.468 kb on + strand at 1903.468 kb on + strand at 1903.468 kb on + strand at 1903.468 kb on + strand at 1903.468 kb on + strand at 1903.469 kb on - strand at 1903.469 kb on - strand at 1903.539 kb on + strand at 1903.540 kb on - strand at 1903.540 kb on - strand at 1903.540 kb on - strand at 1903.550 kb on + strand at 1903.551 kb on - strand at 1903.557 kb on - strand at 1903.635 kb on + strand, within PS417_08745 at 1903.635 kb on + strand, within PS417_08745 at 1903.636 kb on - strand, within PS417_08745 at 1903.636 kb on - strand, within PS417_08745 at 1903.648 kb on - strand, within PS417_08745 at 1903.651 kb on + strand, within PS417_08745 at 1903.881 kb on - strand, within PS417_08745 at 1903.924 kb on - strand, within PS417_08745 at 1903.924 kb on - strand at 1904.009 kb on + strand at 1904.010 kb on - strand at 1904.067 kb on + strand at 1904.090 kb on + strand at 1904.090 kb on + strand at 1904.090 kb on + strand at 1904.090 kb on + strand at 1904.091 kb on - strand at 1904.102 kb on - strand at 1904.110 kb on - strand at 1904.130 kb on - strand at 1904.130 kb on - strand at 1904.130 kb on - strand at 1904.130 kb on - strand at 1904.252 kb on - strand at 1904.417 kb on + strand, within PS417_08750
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress remove 1,901,988 + PS417_08730 0.77 +1.3 1,901,989 - PS417_08730 0.77 -0.9 1,902,254 - +0.2 1,902,516 + PS417_08735 0.61 -0.2 1,902,516 + PS417_08735 0.61 -0.5 1,902,516 + PS417_08735 0.61 -0.8 1,902,516 + PS417_08735 0.61 -0.2 1,902,547 - PS417_08735 0.68 -0.6 1,902,547 - PS417_08735 0.68 -0.6 1,902,561 + PS417_08735 0.72 -1.6 1,902,561 + PS417_08735 0.72 +0.4 1,902,562 - PS417_08735 0.72 -0.4 1,902,562 - PS417_08735 0.72 +0.6 1,902,843 - -0.5 1,902,843 - +0.7 1,902,856 + -0.3 1,902,857 - -0.9 1,902,968 + +0.2 1,903,323 + PS417_08740 0.65 -0.6 1,903,324 - PS417_08740 0.65 -1.6 1,903,468 + -0.4 1,903,468 + -0.5 1,903,468 + -0.3 1,903,468 + +0.0 1,903,468 + +0.1 1,903,469 - -0.2 1,903,469 - +2.4 1,903,539 + +0.5 1,903,540 - +0.4 1,903,540 - -0.4 1,903,540 - -0.4 1,903,550 + -0.3 1,903,551 - -0.2 1,903,557 - -0.2 1,903,635 + PS417_08745 0.18 -0.8 1,903,635 + PS417_08745 0.18 -0.3 1,903,636 - PS417_08745 0.19 -0.5 1,903,636 - PS417_08745 0.19 +0.4 1,903,648 - PS417_08745 0.21 -1.1 1,903,651 + PS417_08745 0.22 -0.7 1,903,881 - PS417_08745 0.70 +0.6 1,903,924 - PS417_08745 0.79 +1.1 1,903,924 - +0.2 1,904,009 + -0.5 1,904,010 - -0.9 1,904,067 + -0.3 1,904,090 + +1.7 1,904,090 + -0.9 1,904,090 + -0.0 1,904,090 + -1.6 1,904,091 - -0.3 1,904,102 - +0.2 1,904,110 - -0.5 1,904,130 - -0.1 1,904,130 - -0.4 1,904,130 - -0.6 1,904,130 - +0.3 1,904,252 - -0.1 1,904,417 + PS417_08750 0.39 +1.0
Or see this region's nucleotide sequence