Strain Fitness in Pseudomonas simiae WCS417 around PS417_22865

Experiment: Fraxetin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22855 and PS417_22860 are separated by 60 nucleotidesPS417_22860 and PS417_22865 are separated by 136 nucleotidesPS417_22865 and PS417_22870 are separated by 16 nucleotides PS417_22855: PS417_22855 - ssDNA exonuclease RecJ, at 4,953,160 to 4,954,869 _22855 PS417_22860: PS417_22860 - hypothetical protein, at 4,954,930 to 4,955,472 _22860 PS417_22865: PS417_22865 - CoA-transferase, at 4,955,609 to 4,956,802 _22865 PS417_22870: PS417_22870 - lipoprotein, at 4,956,819 to 4,957,682 _22870 Position (kb) 4955 4956 4957Strain fitness (log2 ratio) -1 0 1 2at 4954.656 kb on + strand, within PS417_22855at 4955.017 kb on + strand, within PS417_22860at 4955.017 kb on + strand, within PS417_22860at 4955.017 kb on + strand, within PS417_22860at 4955.018 kb on - strand, within PS417_22860at 4955.093 kb on - strand, within PS417_22860at 4955.169 kb on + strand, within PS417_22860at 4955.282 kb on - strand, within PS417_22860at 4955.282 kb on - strand, within PS417_22860at 4955.321 kb on + strand, within PS417_22860at 4955.322 kb on - strand, within PS417_22860at 4955.333 kb on + strand, within PS417_22860at 4955.409 kb on - strand, within PS417_22860at 4955.409 kb on - strand, within PS417_22860at 4955.563 kb on - strandat 4955.563 kb on - strandat 4955.567 kb on + strandat 4955.771 kb on + strand, within PS417_22865at 4955.771 kb on + strand, within PS417_22865at 4955.772 kb on - strand, within PS417_22865at 4955.772 kb on - strand, within PS417_22865at 4955.871 kb on + strand, within PS417_22865at 4955.872 kb on - strand, within PS417_22865at 4955.979 kb on + strand, within PS417_22865at 4955.980 kb on - strand, within PS417_22865at 4956.065 kb on + strand, within PS417_22865at 4956.065 kb on + strand, within PS417_22865at 4956.065 kb on + strand, within PS417_22865at 4956.066 kb on - strand, within PS417_22865at 4956.066 kb on - strand, within PS417_22865at 4956.068 kb on - strand, within PS417_22865at 4956.068 kb on - strand, within PS417_22865at 4956.218 kb on + strand, within PS417_22865at 4956.219 kb on - strand, within PS417_22865at 4956.219 kb on - strand, within PS417_22865at 4956.563 kb on + strand, within PS417_22865at 4956.564 kb on - strand, within PS417_22865at 4956.564 kb on - strand, within PS417_22865at 4956.817 kb on + strandat 4956.818 kb on - strandat 4957.125 kb on + strand, within PS417_22870at 4957.282 kb on - strand, within PS417_22870at 4957.448 kb on + strand, within PS417_22870at 4957.594 kb on + strand, within PS417_22870at 4957.605 kb on + strandat 4957.642 kb on - strandat 4957.642 kb on - strandat 4957.665 kb on + strandat 4957.756 kb on + strandat 4957.757 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
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4,954,656 + PS417_22855 0.87 -1.1
4,955,017 + PS417_22860 0.16 -0.1
4,955,017 + PS417_22860 0.16 -0.0
4,955,017 + PS417_22860 0.16 -0.0
4,955,018 - PS417_22860 0.16 +0.2
4,955,093 - PS417_22860 0.30 -0.1
4,955,169 + PS417_22860 0.44 -0.4
4,955,282 - PS417_22860 0.65 +0.7
4,955,282 - PS417_22860 0.65 +0.1
4,955,321 + PS417_22860 0.72 -0.2
4,955,322 - PS417_22860 0.72 -0.2
4,955,333 + PS417_22860 0.74 +1.4
4,955,409 - PS417_22860 0.88 -1.3
4,955,409 - PS417_22860 0.88 -0.3
4,955,563 - +1.0
4,955,563 - +0.0
4,955,567 + +0.3
4,955,771 + PS417_22865 0.14 -0.5
4,955,771 + PS417_22865 0.14 -0.2
4,955,772 - PS417_22865 0.14 +1.0
4,955,772 - PS417_22865 0.14 +2.0
4,955,871 + PS417_22865 0.22 -0.9
4,955,872 - PS417_22865 0.22 +0.3
4,955,979 + PS417_22865 0.31 +1.2
4,955,980 - PS417_22865 0.31 +1.0
4,956,065 + PS417_22865 0.38 +0.3
4,956,065 + PS417_22865 0.38 +0.1
4,956,065 + PS417_22865 0.38 +2.2
4,956,066 - PS417_22865 0.38 -0.1
4,956,066 - PS417_22865 0.38 -0.3
4,956,068 - PS417_22865 0.38 +0.1
4,956,068 - PS417_22865 0.38 -1.6
4,956,218 + PS417_22865 0.51 +1.0
4,956,219 - PS417_22865 0.51 -0.4
4,956,219 - PS417_22865 0.51 +0.0
4,956,563 + PS417_22865 0.80 -1.5
4,956,564 - PS417_22865 0.80 +1.0
4,956,564 - PS417_22865 0.80 -0.6
4,956,817 + +0.1
4,956,818 - +0.1
4,957,125 + PS417_22870 0.35 +0.5
4,957,282 - PS417_22870 0.54 +1.4
4,957,448 + PS417_22870 0.73 -0.6
4,957,594 + PS417_22870 0.90 +0.4
4,957,605 + -0.5
4,957,642 - +0.1
4,957,642 - -0.6
4,957,665 + +0.4
4,957,756 + -1.2
4,957,757 - +0.5

Or see this region's nucleotide sequence