Strain Fitness in Pseudomonas simiae WCS417 around PS417_04120

Experiment: Scopoletin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04110 and PS417_04115 are separated by 141 nucleotidesPS417_04115 and PS417_04120 are separated by 24 nucleotidesPS417_04120 and PS417_04125 are separated by 79 nucleotides PS417_04110: PS417_04110 - cytochrome D ubiquinol oxidase subunit III, at 924,709 to 925,146 _04110 PS417_04115: PS417_04115 - alpha/beta hydrolase, at 925,288 to 925,923 _04115 PS417_04120: PS417_04120 - tryptophan--tRNA ligase, at 925,948 to 927,303 _04120 PS417_04125: PS417_04125 - ATPase, at 927,383 to 928,477 _04125 Position (kb) 925 926 927 928Strain fitness (log2 ratio) -1 0 1at 925.203 kb on - strandat 925.203 kb on - strandat 925.245 kb on - strandat 925.426 kb on - strand, within PS417_04115at 925.426 kb on - strand, within PS417_04115at 925.433 kb on + strand, within PS417_04115at 925.474 kb on - strand, within PS417_04115at 925.524 kb on + strand, within PS417_04115at 925.801 kb on + strand, within PS417_04115at 925.935 kb on + strandat 927.479 kb on + strandat 927.550 kb on + strand, within PS417_04125at 927.890 kb on + strand, within PS417_04125

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; solid stress
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925,203 - +0.6
925,203 - -1.2
925,245 - -1.5
925,426 - PS417_04115 0.22 -1.2
925,426 - PS417_04115 0.22 -0.6
925,433 + PS417_04115 0.23 -1.6
925,474 - PS417_04115 0.29 -0.3
925,524 + PS417_04115 0.37 -0.6
925,801 + PS417_04115 0.81 +0.6
925,935 + -0.9
927,479 + +0.9
927,550 + PS417_04125 0.15 -0.4
927,890 + PS417_04125 0.46 -1.1

Or see this region's nucleotide sequence